Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30022
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0262 + 1957973-1958220,1958272-1958935 32 0.43
05_03_0274 - 11372054-11372347 32 0.57
04_04_0095 - 22775340-22776017 31 1.00
10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579... 29 3.0
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 29 3.0
08_01_0009 + 68825-68950,72571-72669,72841-72929,74971-75087,757... 29 4.0
06_01_0793 - 5918912-5919793,5919830-5920285 29 4.0
06_01_0082 + 656362-657798 29 5.3
04_04_1126 + 31095651-31096115 29 5.3
03_02_0617 - 9886496-9886888,9886984-9887310 29 5.3
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 28 7.0
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459... 28 9.3
12_02_0063 + 13098519-13099585,13099759-13099906 28 9.3
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178... 28 9.3
03_05_0267 - 22538631-22539452 28 9.3
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 28 9.3
>07_01_0262 + 1957973-1958220,1958272-1958935
Length = 303
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 214 PSRQRARQESACEGCAAPRSTPSPASQPRRWCFISFSVPCQQAP 83
P+R+R +A E C+ P S P+ A RR PCQ P
Sbjct: 101 PTRRRPSPAAAAEKCSLPASPPTTAGVARRTYGTRGGWPCQAPP 144
>05_03_0274 - 11372054-11372347
Length = 97
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 39 WPLHPAHGVNTTLVVGACWQGTEKDMKHHLRGWLAGLG 152
W L P H + G W+ E+ +H GWLAG G
Sbjct: 42 WMLPPLHALGNASDRGCAWR--ERRNRHGSHGWLAGFG 77
>04_04_0095 - 22775340-22776017
Length = 225
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 211 SRQRARQESACEGCAAPRSTPSPASQPRRWCFIS 110
SR AR E AC+ AA TP+PAS W +S
Sbjct: 120 SRVLARGELACQDNAAAAVTPAPASSGSTWLRLS 153
>10_02_0143 +
5795028-5795108,5795197-5795403,5795878-5795976,
5796136-5796224,5797876-5797992,5798262-5798367,
5798522-5798606,5798699-5798808,5799335-5799465,
5799686-5799782,5800310-5800603
Length = 471
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 135 WLAGLGVLRGAAQPSHALSCLARCREGLSLAPDLCNYS 248
WLAG + Q + RC+E +SL D+ NYS
Sbjct: 357 WLAGSYICDYLQQSETTEDAMERCKEVMSLEADMGNYS 394
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 187 SACEGCAAPRSTPSPASQPRRW 122
S C GCAAP +P P + RW
Sbjct: 320 SFCFGCAAPAHSPCPCAMWERW 341
>08_01_0009 +
68825-68950,72571-72669,72841-72929,74971-75087,
75747-75906,76419-76549,76810-76906,77584-77877
Length = 370
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 135 WLAGLGVLRGAAQPSHALSCLARCREGLSLAPDLCNYS 248
WLAG + Q + RC+E +SL D+ NYS
Sbjct: 256 WLAGSYICDYLQQSETMEDAMERCKEVMSLEADMGNYS 293
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 39 WPLHPAHGVNTTLVVGACWQGTEKDMKHHLRGWLAGLGVLRGAAQPSHALSC 194
W L HGV+ + V+ +Q K H GW+ + +L AA + C
Sbjct: 277 WALRKPHGVDLSDVLPPGYQERTKSHGHVAMGWVPQITILAHAAVGAFLTHC 328
>06_01_0082 + 656362-657798
Length = 478
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = -3
Query: 238 HRSGARLSPSRQRARQESACEG--CAAPRSTPSPAS---QPRRWCFISFSVPCQQ--APT 80
H + LSPS R +S E A P S+P+ +S + R +++ Q AP
Sbjct: 83 HSQASPLSPSALRRHYKSLSESLRSAPPSSSPAVSSAVKEALRRAADAYAALANQAAAPV 142
Query: 79 TRVVLTPCAGCR 44
T CAGCR
Sbjct: 143 PPTFWTACAGCR 154
>04_04_1126 + 31095651-31096115
Length = 154
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = -3
Query: 226 ARLSPSRQRARQESACEGCAAPRSTPSPASQPRRWCFISFSVPCQQAPTTRVVLTPCAGC 47
A L+ S Q A +AC C P+ P P P VPC P T TP C
Sbjct: 19 AALALSAQLA-PAAACSYCPTPKPPPPPPPAPS-------GVPCPPPPYTPTPATPTGKC 70
>03_02_0617 - 9886496-9886888,9886984-9887310
Length = 239
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 88 APTTRVVLTPCAGCR 44
+PTT VVL+PCA C+
Sbjct: 54 SPTTTVVLSPCAACK 68
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -3
Query: 226 ARLSPSRQRARQESACEGCAAPRSTPSPASQPRRWCFISFSVPCQQAPTTRVVLTPCAGC 47
AR SP Q S +P+ +PSP+ PRR S + T +++
Sbjct: 65 ARPSPIAQLKTLASIRAPAPSPKPSPSPSPSPRR------STSASPSATLSSLVSRTFSN 118
Query: 46 RGQSSITSGPLPS 8
SS +S PLPS
Sbjct: 119 NAASSSSSKPLPS 131
>12_02_0661 +
21644328-21644517,21644697-21644875,21644899-21645922,
21647108-21647262
Length = 515
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 307 AELDVRMSLNALSDNVLMXCE*LHRSGARLSPSRQRARQESACE 176
A+L R + LSD+ E +H R +P ++R + ACE
Sbjct: 206 AKLSERDKKSVLSDSTKYEVESIHNESERNTPHKKRGLECKACE 249
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -3
Query: 238 HRSGARLSPSRQRAR--QESACEGCAAPRSTPSPASQPRRWCFISFS-VPCQQAPTTRVV 68
H+ A L P ++ QE A A ++ P + PR+ I+ P Q+ P V
Sbjct: 162 HQESAALPPPQELVPPPQELAPPPYPAAQAAPQAPAPPRQVPVITQQQAPPQKRPAAPVA 221
Query: 67 LTPCAGCRGQSSITSGPL 14
PCA + + ++++ P+
Sbjct: 222 EPPCATKKMKGAVSAKPM 239
>10_08_0793 -
20614583-20614897,20615417-20615660,20617713-20617899,
20618508-20618547,20618699-20618775,20618965-20619091
Length = 329
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 472 PW*HCHSSTTPAISCCLLLNHHLMLSKIIMDNFLE 576
P+ CHSS+ A LLL+HH ++ N +E
Sbjct: 115 PYCRCHSSSKHAKGSLLLLHHHHQQQQLQRPNEME 149
>03_05_0267 - 22538631-22539452
Length = 273
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 217 SPSRQRARQESACEGCAAPRSTPSP 143
SP+R S GC+A R TPSP
Sbjct: 195 SPARTSPPSSSPSRGCSARRPTPSP 219
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 227 CQTESLPAASQTGERVRGLCGAAQHAQPRQPTAEVVLHILLGALPTSADDEG 72
C+ + L ++ +R+ + G A P +LH+ +PTS EG
Sbjct: 445 CEIKVLDTVPKSEDRIVFISGPAHPGDGISPAQNAILHVQRKIVPTSNTKEG 496
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,249,660
Number of Sequences: 37544
Number of extensions: 395823
Number of successful extensions: 1178
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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