Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30020
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 113 7e-26
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 107 6e-24
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 106 1e-23
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 104 6e-23
10_08_1046 + 22542074-22544749,22544837-22545544 30 1.2
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 27 8.4
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759... 27 8.4
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 27 8.4
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248... 27 8.4
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 27 8.4
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 27 8.4
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 113 bits (273), Expect = 7e-26
Identities = 51/93 (54%), Positives = 68/93 (73%), Gaps = 3/93 (3%)
Frame = +3
Query: 216 PWSSKVHEFRTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
P+ + + +F + GP MVWEG V+K GR+++GAT+P S+PGTIRGDL + VGRNIIH
Sbjct: 100 PFFNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIH 159
Query: 387 GSDSVESAKKEIGLWFTDKEVVGWTPANENWVY 485
GSD E+AK EIGLWF +E+V +T E W+Y
Sbjct: 160 GSDGPETAKAEIGLWFEPRELVSYTSNEEKWIY 192
Score = 106 bits (254), Expect = 1e-23
Identities = 48/84 (57%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Frame = +1
Query: 34 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 213
A + ERTFI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL RPF
Sbjct: 42 AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPF 101
Query: 214 FPGLVKYMSSGPV--VLWYGRALM 279
F GL ++SSGPV ++W G ++
Sbjct: 102 FNGLCDFLSSGPVLAMVWEGEGVI 125
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 107 bits (257), Expect = 6e-24
Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 3/94 (3%)
Frame = +3
Query: 216 PWSSKVHEFRTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
P+ + E+ GP MVWEG VV TGR+++GATNP ++PGTIRGD + +GRN+IH
Sbjct: 58 PFFGGLVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIH 117
Query: 387 GSDSVESAKKEIGLWFTDKEVVGWTPANENWVYE 488
GSDSVE+A+KEI LWF + + W W+YE
Sbjct: 118 GSDSVENARKEIALWFPE-GIAEWRSNQHPWIYE 150
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/80 (55%), Positives = 62/80 (77%), Gaps = 2/80 (2%)
Frame = +1
Query: 46 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 225
E+TFIM+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GL
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63
Query: 226 VKYMSSGPVV--LWYGRALM 279
V+Y+ SGPVV +W G+ ++
Sbjct: 64 VEYIVSGPVVAMVWEGKQVV 83
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 106 bits (255), Expect = 1e-23
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 2/77 (2%)
Frame = +1
Query: 46 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 225
E++FIM+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPGL
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
Query: 226 VKYMSSGPVV--LWYGR 270
V+Y+ SGPVV +W G+
Sbjct: 62 VEYIISGPVVAMVWEGK 78
Score = 98.7 bits (235), Expect = 3e-21
Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 3/94 (3%)
Frame = +3
Query: 216 PWSSKVHEFRTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
P+ + E+ GP MVWEG +VV TGR+++GAT P ++ PGTIR D ++VGRN+IH
Sbjct: 56 PFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIH 115
Query: 387 GSDSVESAKKEIGLWFTDKEVVGWTPANENWVYE 488
GSDSV++ KKEI LWF + + W W+YE
Sbjct: 116 GSDSVDNGKKEIALWFPE-GLAEWRSNLHPWIYE 148
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 104 bits (249), Expect = 6e-23
Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 2/80 (2%)
Frame = +1
Query: 46 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 225
E+++IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGL 62
Query: 226 VKYMSSGPVV--LWYGRALM 279
++Y++SGPVV W G ++
Sbjct: 63 IEYITSGPVVCMAWEGNGVV 82
Score = 101 bits (241), Expect = 6e-22
Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 3/94 (3%)
Frame = +3
Query: 216 PWSSKVHEFRTCGPMV---WEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
P+ + E+ T GP+V WEG VV + R+++GATNP ++PGTIRGDL +Q GRN++H
Sbjct: 57 PFFPGLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVH 116
Query: 387 GSDSVESAKKEIGLWFTDKEVVGWTPANENWVYE 488
GSDS ++ K+EI LWF + E+ W W+ E
Sbjct: 117 GSDSPDNGKREIALWFKEGELCEWESVLTPWLVE 150
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = +1
Query: 46 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 225
ER +VK +G G FE KG G +WP ++ + H +L S+P+ P
Sbjct: 195 ERRLSLVKQNGGAPGEFDHNRWLFETKGTYGYG-NAIWPEDDGVAGHPKELMSKPWRPLT 253
Query: 226 VKYMSSGPVVLWYGRALML*RL 291
K V+ Y R L+L RL
Sbjct: 254 RKLRIQAAVISPY-RLLVLIRL 274
>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 398 AVRTMDDVTPNL-NAEITADSAGLRVSWVSCAKHLTASLHNIKAL 267
A+R+ +T L NA IT ++ G S VSC HL+ S +++ +
Sbjct: 2086 ALRSTQMITTVLPNANITPNNLGTLDSAVSCFLHLSESASSVETI 2130
>07_03_0810 -
21674710-21674960,21675318-21675405,21675739-21675990,
21676521-21676685,21677358-21678494
Length = 630
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 458 PAHNFFVRKPEAYFLFSRFNAVRTMDD-VTPNLNAEITADSAGLRVSWVSCAKHLTASLH 282
P F + E + ++ RFN T+DD + P+L S GL + A +LH
Sbjct: 217 PPSGVFAKLRELHLVYVRFNGELTLDDAMLPSLEWLDIGKSRGLASLTLRLAPLTLMALH 276
Query: 281 NIKAL 267
+++ L
Sbjct: 277 DMRWL 281
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 28 MMAEQRERTFIMVKPDGVQRGLV-GTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD--L 198
M E ER ++KP+ R L G+ ++F +KL+G+K +PS+++ + SD L
Sbjct: 628 MDQELAERQLDVIKPNLQSRMLKEGSEYDQF----WKLLGVKSEYPSQKIAKDQESDPHL 683
Query: 199 ASRPFFPGLVK 231
S F G++K
Sbjct: 684 FSCTFSKGVLK 694
>04_04_1320 -
32623378-32623949,32624035-32624451,32624548-32624895,
32625671-32625768,32625882-32626051,32627134-32627418,
32628041-32628119,32628481-32628623,32629227-32629634
Length = 839
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 180 ATLQRFGIPAFLPWSSKVHEFRTCGP 257
A L R GIPA+ WS +H GP
Sbjct: 77 AALPRLGIPAYEWWSEALHGVSYVGP 102
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 199 PNRCSVAGEVLLMAIRISNR 140
PN+CS+ ++LL+A+RI R
Sbjct: 1388 PNKCSLLPKILLVAVRIIQR 1407
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 120 FETFNNGAHKTTLYTIRLNHNKSTL 46
+ F +K T+YT+RL+HN+ L
Sbjct: 421 YRAFTWAEYKRTMYTLRLSHNRLDL 445
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,862,795
Number of Sequences: 37544
Number of extensions: 338150
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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