Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30019
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 105 3e-23
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 103 1e-22
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 102 2e-22
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 1.5
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 6.1
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 6.1
09_04_0520 + 18286435-18287279,18287818-18288697 27 8.1
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 8.1
08_02_1092 + 24267737-24268641,24269005-24269884 27 8.1
05_03_0656 - 16676406-16676654 27 8.1
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 105 bits (252), Expect = 3e-23
Identities = 51/71 (71%), Positives = 57/71 (80%)
Frame = +3
Query: 54 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 234 KVKADRDKRHP 266
KVKADRD+ P
Sbjct: 60 KVKADRDESSP 70
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/51 (50%), Positives = 28/51 (54%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 439
QDVA++CK LGITALHIKLRA AQ MKIGRI
Sbjct: 78 QDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +2
Query: 440 EDVTPVPSDSTRRR 481
EDVTPVP+DSTRR+
Sbjct: 178 EDVTPVPTDSTRRK 191
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 103 bits (246), Expect = 1e-22
Identities = 49/71 (69%), Positives = 55/71 (77%)
Frame = +3
Query: 54 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 234 KVKADRDKRHP 266
KVKADRD+ P
Sbjct: 61 KVKADRDESSP 71
Score = 62.1 bits (144), Expect = 3e-10
Identities = 38/76 (50%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI--------- 439
QDVA++CK LGITALHIKLRA AQ MKIGRI
Sbjct: 79 QDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVLSIFC 138
Query: 440 --EDVTPVPSDSTRRR 481
EDVTPVP+DSTRR+
Sbjct: 139 HTEDVTPVPTDSTRRK 154
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 102 bits (244), Expect = 2e-22
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +3
Query: 63 RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 242
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 243 ADRDKRHP 266
ADRD+ P
Sbjct: 86 ADRDESSP 93
Score = 74.5 bits (175), Expect = 5e-14
Identities = 38/65 (58%), Positives = 42/65 (64%)
Frame = +2
Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTPVP+D
Sbjct: 101 QDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTD 160
Query: 467 STRRR 481
STRR+
Sbjct: 161 STRRK 165
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 325 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 435
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 108 PQHLVGETVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 239
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 338 LCARPLCQEFCISLLHPV 285
LC R LC+EFC+ + P+
Sbjct: 51 LCTRDLCEEFCLLRISPL 68
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 148 CATPNTVSPTKCWGPR 101
C P+ V+PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 310 NSWHNGLAHKAPCYWWKQNKDPWSWC 387
+ W GL +P Y + N D + WC
Sbjct: 305 DGWQEGLITFSPTYKYHPNSDQYYWC 330
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 148 CATPNTVSPTKCWGPR 101
C P+ V+PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 280 GGTGCSREMQNSWHNGLAHKAPCYWWKQNKD 372
GG G + + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,496
Number of Sequences: 37544
Number of extensions: 316224
Number of successful extensions: 777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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