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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30004
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451     85   3e-17
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009     78   4e-15
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...    61   5e-10
12_01_0899 - 8689125-8689383,8689540-8689826                           30   1.3  
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754...    29   1.7  
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    29   2.3  
09_04_0201 + 15543318-15543488,15543956-15544069                       29   3.0  
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220...    28   4.0  
04_01_0053 + 551027-553024                                             28   4.0  
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398...    27   6.9  
10_01_0318 + 3493913-3496976,3497064-3497392                           27   9.1  
03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729...    27   9.1  
03_02_0090 - 5564326-5567280                                           27   9.1  
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056     27   9.1  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 42/71 (59%), Positives = 49/71 (69%)
 Frame = +3

Query: 249 CWKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGH 428
           C K   YVY+AK ++   GG     T  R IWGKVTRPHGNSG VRAKFKSNLP  +MG 
Sbjct: 50  CGKRMAYVYKAKTKS---GG-----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGR 101

Query: 429 RIRVMLYPSRI 461
           ++RV +YPS I
Sbjct: 102 KVRVFMYPSSI 112



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +1

Query: 133 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
           RLY +    GYKR   NQ+ENT+L+++EG   + +  +Y G
Sbjct: 11  RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCG 51


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 37/69 (53%), Positives = 47/69 (68%)
 Frame = +3

Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
           K   YVY+AK ++          + +R IWGKVTRPHGNSG VRAKF+SNLP  +MG ++
Sbjct: 51  KRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKV 102

Query: 435 RVMLYPSRI 461
           RV +YPS I
Sbjct: 103 RVFMYPSSI 111



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +1

Query: 109 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
           K  + +  RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAG
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAG 50


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 30/56 (53%), Positives = 37/56 (66%)
 Frame = +3

Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 422
           K   YVY+AK ++          + +R IWGKVTRPHGNSG VRAKF+SNLP  +M
Sbjct: 51  KRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +1

Query: 109 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
           K  + +  RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAG
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAG 50


>12_01_0899 - 8689125-8689383,8689540-8689826
          Length = 181

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 436 RILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 302
           R+L P + A R  +  AR  LPE PC R+ LP+    +  LP  PP
Sbjct: 17  RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60


>12_01_0819 +
           7545656-7546006,7546087-7546162,7547196-7547401,
           7547498-7547584,7547673-7547765,7548172-7548326,
           7548470-7548554,7548632-7548718,7548801-7548920,
           7549707-7549808,7549903-7550070
          Length = 509

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 290 PLLSSVHIDAMLPA*KTASLRSFAPSTLRRAVFSCWLRRPRLYPVNTA 147
           P L + H D +LP+   A+  +   ST     FS WLR   L P   A
Sbjct: 43  PRLVACHADTLLPSSSPAAAAAACASTASANGFSDWLREHGLPPGKVA 90


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 455 GRIQHHSYSVSHSLGREVRLE 393
           GR+ HHS+ VS  L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144


>09_04_0201 + 15543318-15543488,15543956-15544069
          Length = 94

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 361 GRVTLPQIARSLVFLPRGPPGIGVLFL 281
           GR+  PQ + S V  PRG PG+ VL L
Sbjct: 6   GRLPRPQGSSSAVPRPRGLPGVSVLLL 32


>07_01_0308 +
           2203597-2203774,2203886-2204066,2204141-2204282,
           2204371-2204440,2204546-2204715
          Length = 246

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 326 GFFATGTSGNWCPLLSSVHI 267
           GFFA    G+WC LL+ ++I
Sbjct: 171 GFFAAAIIGSWCNLLTVIYI 190


>04_01_0053 + 551027-553024
          Length = 665

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -1

Query: 368 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 279
           A++AGHL      P+   +GFFA+G+ G    LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265


>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
            3983250-3983301,3983497-3983654,3983756-3985617,
            3986029-3986093,3986176-3986340,3986836-3986893,
            3987479-3987590,3987661-3987712,3988080-3988140,
            3988220-3988377,3988705-3988787,3988897-3988945,
            3989122-3989185,3990225-3990317,3990410-3990543,
            3991364-3991585,3991815-3991937,3992103-3992267,
            3993064-3993450
          Length = 1479

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 313  VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTEYE*C 444
            +A +P+CVL G +      T + ++   SSS+    RLWDT  + C
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275


>10_01_0318 + 3493913-3496976,3497064-3497392
          Length = 1130

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -2

Query: 430 LCPIAWAGRLDLNLARTLPELPCGRVTLPQIARSLVFLPRGPPGIGVLFLALYT 269
           LC  + +G +   LA  LPEL    ++   ++  +   P  PP  G+++L+LY+
Sbjct: 184 LCVNSLSGAIPPELAAALPELTYLDLSSNNLSGPM---PEFPPRCGLVYLSLYS 234


>03_02_0306 +
           7290086-7290283,7290998-7291154,7291270-7291377,
           7291494-7291621,7291733-7291861,7291945-7292012,
           7292130-7292361
          Length = 339

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 449 IQHHSYSVSHSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATG 309
           I  H + + H   R+  ++  +       W G L P+S +L FF  G
Sbjct: 248 INGHDHCLEHISSRDSPIQYFTSGGGSKAWRGVLQPNSDKLQFFYDG 294


>03_02_0090 - 5564326-5567280
          Length = 984

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -2

Query: 385  RTLPELPCGRVTLPQIARSLVFLPRGPPGIGVLFLALYT*TQCFQHKRL 239
            RT    PC +       RSL  L RG P I    L +    QC+  +RL
Sbjct: 896  RTPTTFPCLKTLAVHGMRSLACLCRGVPAISFPALEILEVGQCYALRRL 944


>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
          Length = 530

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 242 TASLRSFAPSTLRRAVFSCWLRRPRLYPVNTAFAYSLPWRGFDAL 108
           T +L S+ P +  R  F+ W+R      V     +++PW G   L
Sbjct: 153 TVTLTSYFPES-ERDTFAGWIRAVAAKGVRDLTLHNIPWSGLHVL 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,552
Number of Sequences: 37544
Number of extensions: 317380
Number of successful extensions: 917
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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