Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30001
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0549 - 4051257-4051709,4051967-4052075,4053194-4053252,405...    29   3.7  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    29   4.9  
01_06_1272 - 35893994-35894485                                         29   4.9  
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     28   6.5  
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317...    28   6.5  
09_02_0543 + 10427321-10428315,10428440-10429154                       28   8.6  

>01_01_0549 -
           4051257-4051709,4051967-4052075,4053194-4053252,
           4053339-4053445,4053711-4053867,4054110-4054169,
           4055396-4055524,4056027-4056074,4057148-4057214,
           4057948-4058006
          Length = 415

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 629 FGVTTVVNITKGKNDPSVATDQRNWLTKLSQENADPRPK 513
           F +T V +I  G ++P       +WL K+ QEN +P PK
Sbjct: 151 FQMTGVTDILVGASNPETLHPDVDWLEKVLQEN-NPIPK 188


>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 208  DYEGGALTPCRKILLFEGIKFGYLIDLMKAEVE 110
            +Y+   L  CR   L++G+K G   DLM A ++
Sbjct: 1034 EYDHSCLRSCRSRALYKGLKVGSTPDLMVAYID 1066


>01_06_1272 - 35893994-35894485
          Length = 163

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +1

Query: 598 LVIFTTVVTPK----TPSLPIGLIIGHPSLDHHPNNWLQ 702
           + ++TTV TP      PS    +  GH  + HH   WL+
Sbjct: 1   MTLYTTVATPAEAAGVPSSQHPVFAGHGPIGHHSGGWLR 39


>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 577  TLGSFFPLVIFTTVVTPKTPSLPIGLIIGHPSLDHHPNNWL 699
            T G   P + +TT VT K      G+++    + HHP ++L
Sbjct: 928  TKGYLAPELAYTTRVTEKCDVYSFGVLVFELFMGHHPGDFL 968


>01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,
            3179892-3179999
          Length = 957

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 404  YRLNLRKLIGKICYTTLNTLFGSVKLTLLESHQKCFLQIK 285
            + +NLR+ +G +   T    F  + +++ E    CF +IK
Sbjct: 901  FDINLRRQLGALSSKTFEVFFKLINISISEDETVCFNRIK 940


>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 470 PVC*ESSARIYLIILWVWDLHSPEIVL*ANFSDLWPHWG 586
           PV  +  A  ++++ WVW L+    +L A    LW   G
Sbjct: 434 PVLLQEGAPPFMLLKWVWSLYGRNAILDAADERLWAAGG 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,703,873
Number of Sequences: 37544
Number of extensions: 340558
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)