Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10412
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1027 + 25496311-25496811 43 4e-04
05_01_0480 + 3986034-3986363 35 0.094
05_05_0308 - 23985165-23985556,23985624-23985699 34 0.12
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789... 31 1.2
01_05_0049 + 17577358-17577993 31 1.5
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 30 2.0
05_05_0309 - 23987669-23988042,23989485-23989560 30 2.7
03_02_0817 + 11492699-11492774,11493605-11493978 30 2.7
01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858 30 2.7
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 29 3.5
07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253 29 4.7
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619 29 4.7
02_01_0738 + 5501894-5501978,5502130-5502369,5502880-5503079,550... 29 4.7
03_01_0526 + 3956909-3957071,3957262-3957317,3957398-3957462,395... 29 6.2
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 29 6.2
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 28 8.2
12_01_0049 + 417325-419068,419667-420307 28 8.2
11_01_0088 - 662984-663024,663743-663774,664079-664503,665048-66... 28 8.2
11_01_0047 + 358370-360107,360713-361353 28 8.2
>12_02_1027 + 25496311-25496811
Length = 166
Score = 42.7 bits (96), Expect = 4e-04
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Frame = +2
Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVG----EASGPINFTQLLTLFANRMS------ 409
DG I +L SLG+ + +EL EM+ + +G I F + L L A + S
Sbjct: 28 DGCITLEELDTVVRSLGQTPTREELAEMIRDVDVDGNGTIEFAEFLALMARKASRGGENG 87
Query: 410 GGSDE-----DDVVINAFKTF--DEEGKIDSERLRHALMT 508
GG D+ D+ + AFK F D++G I + LRH +++
Sbjct: 88 GGGDDSGDAADEELREAFKVFDKDQDGLISAAELRHVMIS 127
Score = 31.5 bits (68), Expect = 0.88
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 257 KDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTL 391
+DG+I +LR SLG +++E+++M+ EA G +NF + + +
Sbjct: 112 QDGLISAAELRHVMISLGEKLTDEEVEQMIREADLDGDGQVNFDEFVRM 160
>05_01_0480 + 3986034-3986363
Length = 109
Score = 34.7 bits (76), Expect = 0.094
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +2
Query: 230 GGIPANGSHK--DGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANR 403
GG P N H+ DG+ + A D+ + + DE + + ++ L N
Sbjct: 6 GGNPVNVQHREGDGVQSNSGSTAPGDT-NNMRRSRSFDEYMRDRPARVDDDGCRALRTNG 64
Query: 404 MSGGSDEDDVVINAFKTFDEEGKIDSERLRHALMTGATSSPPTK 535
+ GG+ D +++A ++ + S + H L + + SSP TK
Sbjct: 65 LPGGAAAADRLVSATPFLPKQNQCCSGSVDHHLCSFSKSSPSTK 108
>05_05_0308 - 23985165-23985556,23985624-23985699
Length = 155
Score = 34.3 bits (75), Expect = 0.12
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Frame = +2
Query: 251 SHKDGIIGKNDLRATFDSLGRLASEKELDEMVGEAS---------GPINFTQLLTLFANR 403
S +DG I +L SLG+ E E + +A+ G I+F L++ A +
Sbjct: 22 SDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASGGGGGGGGDIDFAAFLSVAARK 81
Query: 404 MSGGSDEDDVVINAFKTFDE--EGKIDSERLRHALMT 508
M G+ E ++ FD+ G I +E+LR A+++
Sbjct: 82 MRRGATEKELAA-CLDVFDDARSGVIPAEQLRQAMVS 117
>03_06_0762 +
36078414-36078539,36078700-36078750,36078832-36078981,
36079055-36079803,36079914-36080013,36080116-36080259,
36080333-36080452,36080532-36080846
Length = 584
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 365 INFTQLLTLFANRMSGGSDEDDV--VINAFKTFDEEGKIDSERLRHALMTGATSSPPTKS 538
IN T T+ AN SGGS D + + F +D+ R H LMT ++ PPT S
Sbjct: 147 INLTHDDTVNANVNSGGSAAGDHANIKSMFFISQAINGLDTSRHHHPLMTIVSNKPPTPS 206
>01_05_0049 + 17577358-17577993
Length = 211
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Frame = +2
Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRM--SGGSD 421
DG + + +L + SLG S ELD ++ A +G I F++ + L A +
Sbjct: 77 DGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLIEFSEFVALVAPELLYDRAPY 136
Query: 422 EDDVVINAFKTFDEEGK--IDSERLRHAL 502
+D + F FD +G I + L H++
Sbjct: 137 SEDQIRRLFNIFDRDGNGFITAAELAHSM 165
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +2
Query: 257 KDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLL-TLFAN 400
++G I +LR +LG +++E+DEM+ EA G IN+ + + + AN
Sbjct: 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAN 149
>05_05_0309 - 23987669-23988042,23989485-23989560
Length = 149
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +2
Query: 257 KDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLL 385
++G I +LR +LG +++E+DEM+ EA G IN+ + +
Sbjct: 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
>03_02_0817 + 11492699-11492774,11493605-11493978
Length = 149
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +2
Query: 257 KDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLL 385
++G I +LR +LG +++E+DEM+ EA G IN+ + +
Sbjct: 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
>01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858
Length = 146
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +2
Query: 257 KDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLL 385
++G I +LR +LG +++E+DEM+ EA G IN+ + +
Sbjct: 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = -1
Query: 438 ITTSSSSEPPDMRLANRVKS*VKLMGPEASPTISSSSFSDASLPRESKVAR 286
+ S + PP + V+ +L+ P A+PT SSSS SD S SK AR
Sbjct: 131 VAPSFTPPPPILPAPQPVQPQQQLVSPVAAPTSSSSSSSDRS-SGSSKPAR 180
>07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253
Length = 306
Score = 29.1 bits (62), Expect = 4.7
Identities = 28/79 (35%), Positives = 38/79 (48%)
Frame = -1
Query: 423 SSEPPDMRLANRVKS*VKLMGPEASPTISSSSFSDASLPRESKVARKSFLPMMPSLCDPL 244
S PP + V+ +L+ P A+PT SSS SD S SK AR + M S+ +
Sbjct: 230 SFTPPPILPPQPVQPQQQLVSPVAAPTSLSSSSSDRS-SGSSKPARATLTQAM-SVTAAM 287
Query: 243 AGMPP*TRRPASVRT*RRH 187
+ P RR A R +RH
Sbjct: 288 DLLSP-LRRSARPRQEQRH 305
>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
Length = 398
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 640 KPRNDSISTIRSKTPAAVI 696
+ R D+ISTIRS TP AVI
Sbjct: 207 RERQDAISTIRSMTPGAVI 225
>02_01_0738 +
5501894-5501978,5502130-5502369,5502880-5503079,
5503653-5503827,5503923-5504038
Length = 271
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +2
Query: 254 HKDGIIGKNDL-RATFDSLGRLASE-----KELDEMVGEASGPINFTQLLTLFANRMSGG 415
+KDG + KN++ +A +++G S K +EM + +G + F + L F +
Sbjct: 201 NKDGYVSKNEMIQAINETIGGERSSGRIGMKRFEEMDWDKNGTVTFKEFLFAFTRWVGID 260
Query: 416 SDEDD 430
+EDD
Sbjct: 261 DNEDD 265
>03_01_0526 +
3956909-3957071,3957262-3957317,3957398-3957462,
3957560-3958006,3958102-3958227,3958328-3958511,
3958788-3958943
Length = 398
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 159 KPQGKRTGSNVFSMFSQ-KQVAEFKEAFQLMDHTRMASSARTTCAPPSTPWAGSRPRRSS 335
K +G GS + + F+ K A K+ FQ D + A T PP P A SRP +
Sbjct: 102 KRRGAVAGSGIAATFTPPKPKAAAKKRFQ--DDSENQDPALAT--PPPPPPAASRPPFGA 157
Query: 336 MRWS 347
RW+
Sbjct: 158 ARWA 161
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 418 RAAGHAVGE--QSQELSEVDGARSLTDHLIELLLGREPAQGVEGGAQVV 278
R+ G+ E S++ S+ S ++ELL GR P Q GG +VV
Sbjct: 532 RSLGYCAPEVTDSRKASQCSDVYSFGVFILELLTGRSPVQITGGGNEVV 580
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +3
Query: 531 RSHEAYDQMDIDDKGYIDT 587
RSH++++++D DD+G ID+
Sbjct: 544 RSHQSFEEVDNDDRGTIDS 562
>12_01_0049 + 417325-419068,419667-420307
Length = 794
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = -3
Query: 421 VRAAGHAVGEQSQELSEVDGARSLTDH------LIELLLGREPAQGVEG 293
V AA A+G ++ ELS++ A + TD ++ELL G+ PA+ G
Sbjct: 651 VLAAAGALGYRAPELSKLKKASAKTDVYSLGVIILELLTGKSPAETTNG 699
>11_01_0088 -
662984-663024,663743-663774,664079-664503,665048-666006,
666661-666846,666942-667044,667141-667323,667514-667606,
668092-668274,669011-669031
Length = 741
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +3
Query: 531 RSHEAYDQMDIDDKGYIDT 587
RSH++++++D DD+G ID+
Sbjct: 452 RSHQSFEEVDNDDRGTIDS 470
>11_01_0047 + 358370-360107,360713-361353
Length = 792
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = -3
Query: 421 VRAAGHAVGEQSQELSEVDGARSLTDH------LIELLLGREPAQGVEG 293
V AA A+G ++ ELS++ A + TD ++ELL G+ PA+ G
Sbjct: 649 VLAAAGALGYRAPELSKLKKASAKTDVYSLGVIILELLTGKSPAETTNG 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,294,450
Number of Sequences: 37544
Number of extensions: 368509
Number of successful extensions: 1371
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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