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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10411
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85...    40   0.002
02_02_0146 - 7171656-7172044,7172383-7175008                           31   1.3  
07_03_1165 - 24459156-24460139                                         27   3.0  
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648           29   3.1  
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849     29   4.1  
06_03_0066 - 16145398-16145475,16145638-16145700,16146432-161465...    29   4.1  
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29...    29   4.1  
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447           29   4.1  
12_02_0239 - 16125105-16126025,16126966-16127415                       28   7.1  
08_02_1602 - 28148255-28149413,28151927-28152087                       28   7.1  
02_03_0085 + 15063444-15063889,15064324-15065311                       28   7.1  
07_01_1023 + 8840754-8842988,8843189-8843362                           28   9.4  

>02_01_0113 -
           854108-854302,854399-854542,854658-854893,855036-855315,
           856891-857031,857259-857372
          Length = 369

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 303 CTKCKVRCPNETVLKEHIETIHKRASYVCP--ECNKEFVRRSHVTRHMTQSGCNGHQLNL 476
           C +C         LK+H+++     S++CP  +C   ++R+ H+ RHM +     HQ  L
Sbjct: 62  CQECGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHMLK-----HQGKL 116

Query: 477 YPCEV 491
           + C +
Sbjct: 117 FTCSM 121


>02_02_0146 - 7171656-7172044,7172383-7175008
          Length = 1004

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 480 DTNLTDDHYSHSVSYDEL-HENVLQILCCILGIHTKL 373
           DTNL  +  S   +  +L H N++ +LCCI    TKL
Sbjct: 735 DTNLDKEFESEVRTLGDLRHSNIVDLLCCISSQETKL 771


>07_03_1165 - 24459156-24460139
          Length = 327

 Score = 27.5 bits (58), Expect(2) = 3.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 369 KRASYVCPECNKEFVRRSHVTRHM 440
           + AS+ C  CNKEF  R  V  HM
Sbjct: 109 REASFPCHLCNKEFGSRKAVHGHM 132



 Score = 20.6 bits (41), Expect(2) = 3.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 543 DPMCWPKQIATLLIPKSTMP 602
           +PM  P Q+A  + P++ +P
Sbjct: 142 EPMSLPPQVAAPVHPQARLP 161


>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
          Length = 487

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
 Frame = +3

Query: 24  PPGSKNKKLKSSNTDQPIDI----KQEVNSGRVYVCTMCKKSCDEDKWESHVEICRISSN 191
           PP +K K+    N D   ++     + + +   YVC +C K    D+   ++++ R   N
Sbjct: 41  PPPAKKKRSLPGNPDPEAEVIALSPRTLMATNRYVCEICGKGFQRDQ---NLQLHRRGHN 97

Query: 192 IKVPTILLQRMWQEV*VQKELLQHVELNHSTLPNSVACTKCKVRCPNE-TVLKEHIETIH 368
           +  P  L QR  +EV V+K++           P +        R   + T +K+H    H
Sbjct: 98  L--PWKLKQRNPKEV-VRKKVY--------VCPEAGCVHHDPARALGDLTGIKKHFSRKH 146

Query: 369 KRASYVCPECNKEFVRRSHVTRHMTQSG 452
               + C +C+K +   S    H    G
Sbjct: 147 GEKKWKCDKCSKRYAVHSDWKAHSKVCG 174


>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
          Length = 489

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 291 NSVACTKCKVRCPNETVLKEHI 356
           N + C +CKVRC N   + +H+
Sbjct: 332 NYLWCDRCKVRCDNNVTMADHL 353


>06_03_0066 -
           16145398-16145475,16145638-16145700,16146432-16146518,
           16147168-16147246,16147359-16147478,16149289-16149440
          Length = 192

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 258 QHVELNHSTLPNSVACT-KCKVRCPNETVLKEHIETIHKRASYVCPECNK 404
           Q V+L H   P  VA T KC      + VL+E   T H    +V  EC K
Sbjct: 73  QFVQLLHEGRPVVVAFTIKCTYTQHLDKVLEEAAATFHPHVKFVRVECPK 122


>05_01_0042 -
           290077-290676,291093-291233,291675-291764,292364-292563,
           292685-292743,292827-292942
          Length = 401

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 342 LKEHIETIHKRASYVC--PECNKEFVRRSHVTRH 437
           L++H   +H    Y+C  P C K+FV  S + RH
Sbjct: 104 LRKHAH-VHNERQYICQEPGCGKKFVDSSKLKRH 136


>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
          Length = 420

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 342 LKEHIETIHK-RASYVCPECNKEFVRRSHVTRHMTQSGCNGH 464
           +K+H    H  R  +VC  C K +  +S    H+   G  GH
Sbjct: 117 IKKHFRRKHGGRRQWVCARCAKGYAVQSDYKAHLKTCGTRGH 158


>12_02_0239 - 16125105-16126025,16126966-16127415
          Length = 456

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 201 PTILLQRMW-QEV*VQKELLQHVELNHSTLPN---SVACTKCKVRCPNETVLKEHIETIH 368
           PT+L   +W +E+ V   L  H+   H TL +   S  C    V  P E ++ E+     
Sbjct: 192 PTVL--PVWDRELFVATSLSPHIIEEHQTLFDELESATCDDIMVTMPTENMVSEYFTISE 249

Query: 369 KRASYV 386
           K+ SY+
Sbjct: 250 KQMSYL 255


>08_02_1602 - 28148255-28149413,28151927-28152087
          Length = 439

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = +3

Query: 210 LLQRMWQEV*VQKELLQHVELNHSTLP---NSVACTKCKVRCPNETVLKEHIETIHKRAS 380
           L+Q+ WQ    Q    QH   +H+  P   +S            +T+++     +  + +
Sbjct: 202 LMQQQWQ----QNGSRQHDYSSHAHAPPVFHSETAAPAGATSATDTIIELDAAELLAKYT 257

Query: 381 YVCPECNKEFVRRSHVTRHMTQSG 452
           + C  C K F R +++  HM   G
Sbjct: 258 HYCQVCGKGFKRDANLRMHMRAHG 281


>02_03_0085 + 15063444-15063889,15064324-15065311
          Length = 477

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 288 PNSVACTKCKVRCPNETVLKEHIETIH 368
           P + ACTKC   CPN  +    + + H
Sbjct: 272 PPTPACTKCLTECPNNNLTWATVSSSH 298


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 149 VLITGLFTHCTNINSSRINFLFYIYWLI 66
           +++TG FTH  +I S +++ +F   WL+
Sbjct: 775 IMLTGKFTHLQHIYSVKVDEVFCNKWLV 802


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,196,650
Number of Sequences: 37544
Number of extensions: 408073
Number of successful extensions: 1180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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