Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10387
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198...    29   4.5  
01_06_1584 - 38441654-38442847                                         28   6.0  

>01_01_0238 -
           1976645-1977561,1977649-1977909,1978243-1978275,
           1980556-1981345
          Length = 666

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 383 RNSLFFISLDGIIYESNSILLKSEYSYLQYH*CPI-DFSVISGL 255
           R+ LF +  D I YE+NS++   E ++     CP+ DF+V S L
Sbjct: 80  RDHLFRV--DSIFYENNSLVAAVETTFAGDADCPVPDFNVTSSL 121


>01_06_1584 - 38441654-38442847
          Length = 397

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 461 ITSVAVIIIRIWLFIGKIIRLS 396
           +T + +I+I IW  +G+I+RLS
Sbjct: 56  VTRIVLILITIWWGVGEIVRLS 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,447,477
Number of Sequences: 37544
Number of extensions: 149347
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)