Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10385
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0026 - 351737-353443                                             29   5.8  
03_06_0190 + 32219878-32220465,32220551-32220652,32220730-322207...    28   7.6  

>10_01_0026 - 351737-353443
          Length = 568

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 39  GAGPRACEWWLPHRVALLIASPSPLLHIPC*SRPLGRSIQS 161
           G G R  +W   HR+AL  A     LH  C  R + R I++
Sbjct: 323 GNGDRVLDWSARHRIALGSAKGLAYLHEDCHPRIIHRDIKA 363


>03_06_0190 +
           32219878-32220465,32220551-32220652,32220730-32220795,
           32220977-32221042,32221135-32221422,32222178-32222276,
           32222821-32222914,32223923-32223975
          Length = 451

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 121 MWRSGDGDAIRSATRCGSHHSHALGP-APLACARGPLVS 8
           +WRS  GDA  +A   G    HA  P  P   AR P+ S
Sbjct: 71  LWRSVTGDAFPAAAAAGPSSHHAPPPDLPPPAARPPMRS 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,331,449
Number of Sequences: 37544
Number of extensions: 359764
Number of successful extensions: 957
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)