Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30094
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0822 + 21762662-21762767,21763295-21763347,21764639-217647...    55   7e-08
08_02_0107 + 12494650-12495270,12507463-12508146,12508325-125084...    28   6.9  
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    28   9.1  

>07_03_0822 +
           21762662-21762767,21763295-21763347,21764639-21764764,
           21764960-21765062,21765146-21765222
          Length = 154

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
 Frame = +2

Query: 287 QRGQKDLPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSG 466
           QRG   L D++  +   VFLN+L +ISK+ T++Y+L LID++L+ +  R  +F +   SG
Sbjct: 88  QRGP--LLDEDGPSYVRVFLNILRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSG 145

Query: 467 -NVWQPFLN 490
            +++ PFL+
Sbjct: 146 EDIYDPFLS 154


>08_02_0107 +
           12494650-12495270,12507463-12508146,12508325-12508472,
           12508493-12508584,12508713-12509426
          Length = 752

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 338 VFLNLLTHISKDHTIQYILVLIDDILSEDKS 430
           +F+NL+  +  ++  ++++V IDDIL   +S
Sbjct: 125 IFMNLMNKVFMEYVDKFVVVFIDDILVYSQS 155


>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
            27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 341  FLNLLTHISKDHTIQYILVLIDDILSEDKSR 433
            F+NL+  +  ++  ++++V IDDIL   K++
Sbjct: 973  FMNLMNKVFMEYLDKFVVVFIDDILIYSKTK 1003


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,082,964
Number of Sequences: 37544
Number of extensions: 396306
Number of successful extensions: 901
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)