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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30093
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      125   3e-29
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    32   0.42 
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    31   0.98 
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...    31   0.98 
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629...    30   2.3  
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760...    29   3.9  
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448...    29   5.2  
08_02_0802 + 21386248-21387468                                         29   5.2  
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065...    29   5.2  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    29   5.2  
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922     28   9.1  
02_02_0408 + 9901892-9902004,9903777-9903862,9905019-9905129,990...    28   9.1  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  125 bits (302), Expect = 3e-29
 Identities = 57/83 (68%), Positives = 69/83 (83%)
 Frame = +1

Query: 19  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 199 VHFRDPYKFKTRKELFIAPKPLH 267
           V FR P+++K +KELF+A + ++
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMY 83



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
 Frame = +3

Query: 402 ASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSMVGIVAGGGRIDKPIFESWKGHTT 581
           ASG++A VI HNPD   +R+KLPSGAKK++PS  ++M+G VAGGGR +KP+ ++   +  
Sbjct: 129 ASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAY-H 187

Query: 582 SNKVKRN-WLAIM*RGVGH*NLLSIPSRVVVTNHTL*GKASTGQR 713
             +VKRN W  +  RGV   N +  P      NH   G AST +R
Sbjct: 188 KYRVKRNCWPKV--RGVAM-NPVEHPHG--GGNHQHIGHASTVRR 227



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = +2

Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
           YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +GDRG  AR
Sbjct: 83  YTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFAR 128


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 398 RGLWKLRHCDWT 433
           +GLWK RHCDWT
Sbjct: 71  QGLWKCRHCDWT 82


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +1

Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
           T P+ L   L  SV        P R C+   +A+   + E+D L+    K    I Q+ R
Sbjct: 173 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 232

Query: 592 SNVTGW 609
            N+T W
Sbjct: 233 DNLTLW 238


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +1

Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
           T P+ L   L  SV        P R C+   +A+   + E+D L+    K    I Q+ R
Sbjct: 391 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 450

Query: 592 SNVTGW 609
            N+T W
Sbjct: 451 DNLTLW 456


>03_05_0881 +
           28461857-28462263,28462357-28462435,28462798-28462920,
           28463632-28463748,28463861-28463917
          Length = 260

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +1

Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
           T P+ L   L  SV        P R C+   +A+   + E+D L     K    I Q+ R
Sbjct: 172 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLR 231

Query: 592 SNVTGW 609
            N+T W
Sbjct: 232 DNLTLW 237


>11_06_0036 +
           19474848-19475188,19475696-19475774,19475880-19476002,
           19476970-19477086,19477169-19477228
          Length = 239

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +1

Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
           T P+ L   L  SV        P R C+   +A+   + E+D L     K    I Q+ R
Sbjct: 150 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLR 209

Query: 592 SNVTGW 609
            N+T W
Sbjct: 210 DNLTLW 215


>08_02_1026 +
           23743186-23743686,23743793-23743915,23744734-23744850,
           23744948-23745001
          Length = 264

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +1

Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
           T P+ L   L  SV        P R C    +A+   + E+D L     K    I Q+ R
Sbjct: 177 THPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 236

Query: 592 SNVTGW 609
            N+T W
Sbjct: 237 DNLTLW 242


>08_02_0802 + 21386248-21387468
          Length = 406

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 399 VASGNFATVIGHNPDA--KRTRVKLPSGAKKVLPSRQQSMVGIVAG-GGR 539
           V  G      G   DA  +RTR + P+G + VL SR++ +    AG GGR
Sbjct: 137 VVDGEMVLAAGDLSDAAYRRTRARRPAGPRPVLLSRREHVAMRDAGRGGR 186


>08_02_0753 -
           20805672-20805731,20805825-20805941,20806394-20806516,
           20806700-20806778,20806867-20807258
          Length = 256

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +1

Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
           T P+ L   L  SV        P + C+   +A+   + E+D L     K    I Q+ R
Sbjct: 167 THPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 226

Query: 592 SNVTGW 609
            N+T W
Sbjct: 227 DNLTLW 232


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 535 PPPATIPTMLCCLDGRTFLAP-DGSFTLVRL-ASGLCP 428
           PPPA++P+  C    R   +P  G+  L+RL   G CP
Sbjct: 16  PPPASLPSTACTSSSRRRASPWGGAGRLIRLRLRGHCP 53


>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
          Length = 147

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 435 NPDAKRTRVKLPS--GAKKVLPSRQQSMVGIVAGGGRIDKPI 554
           +P + RTR   PS  GA K         +G+  GG R+  PI
Sbjct: 45  SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86


>02_02_0408 +
           9901892-9902004,9903777-9903862,9905019-9905129,
           9905182-9905307,9905546-9905673,9906634-9906726,
           9907873-9908059,9908877-9909637
          Length = 534

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 494 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGHVPDDLYHPFSLQDCTQWYP 342
           WQ ++     L +  LS+   S HS       V +   +PFSL D   W P
Sbjct: 217 WQMVIIKELKLANTNLSMAFGSEHSRAYRVHRVTEKAAYPFSLSDGGGWSP 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,295,896
Number of Sequences: 37544
Number of extensions: 548705
Number of successful extensions: 1360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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