Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30090
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0578 + 5139324-5140190                                           29   3.3  
03_02_1005 - 13136999-13137467,13137871-13138050,13138422-131385...    29   4.3  
11_01_0751 - 6320726-6321108,6321138-6321278,6321404-6321574,632...    29   5.7  
05_01_0223 + 1660246-1660614                                           29   5.7  
01_03_0105 + 12604125-12604583                                         29   5.7  
05_05_0227 - 23449579-23450459,23450574-23450691                       28   7.5  
01_01_0840 - 6557931-6558377                                           28   7.5  
08_01_0426 - 3757110-3758405                                           28   9.9  
02_05_1167 - 34638709-34639104,34640653-34642158                       28   9.9  

>08_01_0578 + 5139324-5140190
          Length = 288

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 571 HQFCSIFCVILLL*QQPHGGSYGGTLTLPPAV 666
           H F ++F   ++L QQ H  ++G    LPP V
Sbjct: 168 HAFAAVFAACVVLSQQFHAWAHGNPRRLPPGV 199


>03_02_1005 -
           13136999-13137467,13137871-13138050,13138422-13138551,
           13138651-13138738,13139316-13139660
          Length = 403

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +3

Query: 501 PRLRC*GDRSRCSLRCTCGCSPRPSVLQYLLCHLTPVTTAPWWFLRRDFNAAPGCIYLMA 680
           PR+   G     +++ +C     P +L+ +L  +    +  WW  RRD  A  G      
Sbjct: 34  PRVAAVGPAEAAAMQQSCWAQLPPELLREVLVRIEE--SEVWWPSRRDVVACAGVCRSWR 91

Query: 681 GATDKLTKV 707
           G T ++ +V
Sbjct: 92  GITKEIVRV 100


>11_01_0751 -
           6320726-6321108,6321138-6321278,6321404-6321574,
           6321912-6322191
          Length = 324

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 558 NRRCSVS--YSGSDRLSNEGAEYVATAGVAWAEYARDG 451
           NRRC V   Y  S+ +  E AE++A AGV +     DG
Sbjct: 226 NRRCLVFQLYQASNEVPRELAEFLADAGVRFVGVGVDG 263


>05_01_0223 + 1660246-1660614
          Length = 122

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 600 DDTEDTAELMVLENNRRCSVSYSGSDRLSNEGAEYVATAGVAWAE 466
           DD  DT+ L +  +   C V   G+    +  +EY +   V W E
Sbjct: 24  DDDNDTSPLAIETSRGTCEVGSHGAMMAGSSESEYYSEEEVGWEE 68


>01_03_0105 + 12604125-12604583
          Length = 152

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 646 LTLPPAVST*WPVQP 690
           LTLPP+++T WPV+P
Sbjct: 5   LTLPPSLATLWPVRP 19


>05_05_0227 - 23449579-23450459,23450574-23450691
          Length = 332

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 429 ILCSRCSSHRAHTPPTLHPQLRR-TPRLRC 515
           ++C +CS     TPP   P+ RR T R+RC
Sbjct: 261 VICGKCSE-LLRTPPPPRPRRRRWTTRIRC 289


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 209 RRQRCGHRERCEL 171
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


>08_01_0426 - 3757110-3758405
          Length = 431

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +3

Query: 558 CSP-RPSVLQYLLCHLTPVTTAPWWFLRRDFNAAPGCIYLMAGATDKLTKVFMPAPLLWG 734
           CS  R +   +   HL   T  P W L       P    L   AT K  +V +PA LL G
Sbjct: 38  CSTWRDAYATFRRLHLPSTTAQPPWLLYACDAHGPAAAALYCPATGKSLRVPLPAALLDG 97


>02_05_1167 - 34638709-34639104,34640653-34642158
          Length = 633

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 504 AEYVATAGVAWAEYARDGWSTVSRVCCER 418
           A+ + +AG  W+    DGWS +    C R
Sbjct: 84  ADILMSAGADWSLQNADGWSALQEAVCTR 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,321,151
Number of Sequences: 37544
Number of extensions: 431703
Number of successful extensions: 1316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)