Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30089
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086     64   1e-10
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766...    31   1.3  
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023...    29   5.2  
05_03_0347 + 12765937-12766085,12766218-12766275,12766609-12766728     28   9.1  

>02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086
          Length = 112

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 32/83 (38%), Positives = 47/83 (56%)
 Frame = +1

Query: 22  IRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVP 201
           +R +KIKT   KRI             +  +   +K++G D +++++QE VL ES MMVP
Sbjct: 4   LRNLKIKTSTCKRIVKELRSYEKEVEKEAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63

Query: 202 DCQRRLIKAYTDLKTTLEQNRTS 270
           DC +RL  A  DLK TL + + S
Sbjct: 64  DCHKRLETALADLKATLAELKES 86


>07_03_0434 +
           18175560-18175695,18176068-18176177,18176553-18176616,
           18176839-18176915,18177152-18177223,18178337-18178456
          Length = 192

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 KQEEVLQESLMMVPDCQRRLIKAYTDL 240
           KQ EV    L+ V DCQRR I  Y+D+
Sbjct: 163 KQFEVFDIELLAVQDCQRRTIAFYSDV 189


>02_05_1276 + 35397948-35398298,35398937-35401738,35402085-35402306,
            35402503-35402562,35402615-35402698,35402740-35402816,
            35403147-35403363
          Length = 1270

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +3

Query: 45   GRRETDCQGKSSLREGSRATEE*NSKNKXXXXXXXXXXXXXX-GSSGVPDDGSRLSKEIN 221
            G  +T+ +G  +L +G  A  E    ++               GS+ VP    + +KE+N
Sbjct: 819  GADQTNGRGHPALSQGPIADNESEKVSRDKSNGSAGGKPFLQIGSNIVPMVVGKETKEVN 878

Query: 222  QSIYRSQNYFRTEQDLKEHEEYITAEQVLKDAE 320
            QSI +   Y   E +      ++ +E+ LK+ +
Sbjct: 879  QSIQQFMVYVGFEHECSYGHRFLLSEKHLKEID 911


>05_03_0347 + 12765937-12766085,12766218-12766275,12766609-12766728
          Length = 108

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 506 NQQAQVSPQQGLHRRPRDQIRAPNYMP 586
           NQQ  +  QQGL R P+ Q + P  +P
Sbjct: 23  NQQFNLRNQQGLGRHPQHQFQRPPVIP 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,792,658
Number of Sequences: 37544
Number of extensions: 232540
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)