Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30087
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 255 3e-68
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 253 1e-67
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 252 3e-67
11_06_0087 - 19919224-19922304 33 0.36
12_02_0371 - 18187169-18188386 31 1.1
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 1.1
04_04_0086 - 22679233-22680450 31 1.1
07_01_1127 + 10456895-10457388,10457488-10458112 30 1.9
05_03_0545 - 15244647-15245147,15245342-15245635 30 1.9
03_05_0883 + 28483429-28484385,28485090-28485398 29 3.4
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 29 3.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 4.5
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 5.9
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 29 5.9
04_01_0252 - 3329712-3331061 29 5.9
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 7.8
03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020 28 7.8
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 255 bits (625), Expect = 3e-68
Identities = 115/175 (65%), Positives = 138/175 (78%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 23 KHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILM 82
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR + VDGKVRT+ TYP GFM I KT E FRL+YD KGRF +H I E+AK+KLCKV
Sbjct: 83 QRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKV 142
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF +G V
Sbjct: 143 RSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 62.9 bits (146), Expect = 3e-10
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGH 629
GN+ M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH
Sbjct: 194 GNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGH 232
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 253 bits (619), Expect = 1e-67
Identities = 113/175 (64%), Positives = 138/175 (78%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILM 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR + VDGKVRT+ TYP GFM I KT E +RL+YD KGRF + + E+AK+KLCKV
Sbjct: 67 QRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF +G V
Sbjct: 127 RSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 64.5 bits (150), Expect = 1e-10
Identities = 33/75 (44%), Positives = 44/75 (58%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTKGVHL 692
GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH IGKG K +
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNK-PWV 236
Query: 693 RCRAGKGLPPSPFAE 737
GKG+ S E
Sbjct: 237 SLPKGKGIKLSIIEE 251
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 252 bits (617), Expect = 3e-67
Identities = 112/175 (64%), Positives = 138/175 (78%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILM 66
Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR + VDGKVRT+ TYP GFM I KT E +RL+YD KGRF + + E+AK+KLCKV
Sbjct: 67 QRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF +G V
Sbjct: 127 RSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 64.1 bits (149), Expect = 1e-10
Identities = 33/75 (44%), Positives = 44/75 (58%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTKGVHL 692
GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH IGKG K +
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNK-PWV 236
Query: 693 RCRAGKGLPPSPFAE 737
GKG+ S E
Sbjct: 237 SLPKGKGIKLSIIEE 251
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 32.7 bits (71), Expect = 0.36
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 377 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TSQLRRL 490
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>12_02_0371 - 18187169-18188386
Length = 405
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 673 PLPIYEHVVQPRGEVCPVESLMCTMSKEPGCLSRDTMVPTR 551
P+P H P+ + ++L+C KEPG SRD P R
Sbjct: 329 PIPTPSHNDHPQMDSSAKKTLICYNCKEPGHFSRDCPQPKR 369
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 127 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 26
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>04_04_0086 - 22679233-22680450
Length = 405
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 673 PLPIYEHVVQPRGEVCPVESLMCTMSKEPGCLSRDTMVPTR 551
P+P H P+ + ++L+C KEPG SRD P R
Sbjct: 329 PIPTPSHNDHPQMDSSAKKTLICYNCKEPGHFSRDCPQPKR 369
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 673 PLPIYEHVVQPRGEVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPP 533
P+P +P+ + ++L+C KEPG SRD + P + RPP
Sbjct: 296 PIPTPSQNDRPQTDSSAKKTLICYNCKEPGHYSRDCLQPRQS--RPP 340
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 673 PLPIYEHVVQPRGEVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPP 533
P+P +P+ + ++L+C KEPG SRD + P + RPP
Sbjct: 188 PIPTPSQNDRPQTDSSAKKTLICYNCKEPGHYSRDCLQPRQS--RPP 232
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -1
Query: 808 LNWSLNPLMRGRTFGRECALSPLPSANGEGGSPLPARQRRCTPFVPLPIYEH 653
LN P M+GR R AL PLP + P P R P + P H
Sbjct: 365 LNAEKRPRMKGRFVKRAAALPPLPLPRHQHPPPPPPRALPPVPMMLAPRGAH 416
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = -1
Query: 748 SPLPSANGEGGSPLPARQRRCTPFVPLPIYEHV-----VQPRGEVCPVESLMCTMSKEPG 584
SP PS++ +PLPA P P P+ EH+ P CP + E
Sbjct: 54 SPPPSSSASTAAPLPA------PPTPSPVPEHLHHHPPPPPPVPPCPPNATHVVPCHEDD 107
Query: 583 CLSRDTMVPTRPKLRPP 533
LS + P RP PP
Sbjct: 108 ELSGERHCPPRPPPPPP 124
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 140 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 12
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 24 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 188
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 651 LFNLVAKCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 541
L + V +C+P S A +CR+SR S+ W P+ S+
Sbjct: 418 LVDAVQRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 673 PLPIYEHVVQPRGEVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPP 533
P P +P+ + ++L+C KEPG SRD + P + RPP
Sbjct: 373 PTPTPSQNDRPQTDSSAKKTLICYNCKEPGHYSRDCLQPRQN--RPP 417
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -1
Query: 634 EVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDQT**SP*SS 482
++C V+S S +PG +SRD VP KL P K P+Q P SS
Sbjct: 1554 KLCQVDS---PDSPQPGGISRDADVPKVVKLEVPPESSKEPEQAKKEPASS 1601
>03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020
Length = 241
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 665 RQGHEGRTSSLPRGQRASAFTIRRRKRGQSAFAPKGSPA 781
R+ H G SSL RG+R A+ RRR+ +S G PA
Sbjct: 5 RRNH-GDASSLARGRRGGAWRARRRE-ARSTAREAGDPA 41
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 277 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 381
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,636,794
Number of Sequences: 37544
Number of extensions: 650363
Number of successful extensions: 2243
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2239
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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