SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30086
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    47   2e-05
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    41   0.001
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804...    36   0.039
08_02_0742 - 20630313-20630798                                         33   0.36 
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283...    32   0.48 
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     32   0.48 
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300...    32   0.64 
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38...    32   0.64 
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171...    31   1.5  
08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799     30   2.6  
08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917     30   2.6  
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406     29   4.5  
08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783     29   4.5  
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720...    29   5.9  
02_05_0713 + 31159574-31160764                                         29   5.9  
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688...    28   7.8  

>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/91 (29%), Positives = 45/91 (49%)
 Frame = +1

Query: 166 EYQITPEETRLKVFMSCNLYYGYVPEVRQKRKQAFASVCLFGEDNNSTISGVWVWRGKEL 345
           +Y+   E T    F++ N   G++  +   RK AF  + + G +    + G+W++RG E+
Sbjct: 314 DYKYNDENT--VSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 371

Query: 346 VFPLSSDWQVDYESYDWKKLDPSSEETKKLV 438
                 D   D E Y+W K+D S E  K+ V
Sbjct: 372 P-KFVMDEVYDMELYEWTKVDISDEAQKERV 401



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/91 (29%), Positives = 45/91 (49%)
 Frame = +1

Query: 166  EYQITPEETRLKVFMSCNLYYGYVPEVRQKRKQAFASVCLFGEDNNSTISGVWVWRGKEL 345
            +Y+   E T    F++ N   G++  +   RK AF  + + G +    + G+W++RG E+
Sbjct: 879  DYKYNDENT--VSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 936

Query: 346  VFPLSSDWQVDYESYDWKKLDPSSEETKKLV 438
                  D   D E Y+W K+D S E  K+ V
Sbjct: 937  P-KFVMDEVYDMELYEWTKVDISDEAQKERV 966


>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +1

Query: 256 RKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEETKK- 432
           RK AF  + + G      + G+W++RG+++      D   D E Y+W K+D S E  K+ 
Sbjct: 353 RKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVDLSDEAQKER 411

Query: 433 ---LVQDYFSWNGTD 468
              +++D   + G D
Sbjct: 412 VNAMIEDQEPFEGED 426



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 148 SHLGMPEYQITPEETRLKVFMSCNLYYGYV 237
           +HL    Y +    T   + M+CNLYYG+V
Sbjct: 167 THLASNTYLVGHSVTLADIVMTCNLYYGFV 196


>12_01_0857 -
           8043765-8043839,8044215-8044497,8044578-8044748,
           8044826-8045670,8045828-8046262,8046339-8046563,
           8046700-8046781,8046814-8047067
          Length = 789

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 382 ESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGR-KFNQGKIFK*CRQTSSQC-IHISYN 552
           E YDW  ++ S  E       Y +  G  KDG  K    K F  C+Q S+QC  H+ +N
Sbjct: 696 EIYDWSAIESSLNEAW---DQYVARGGRHKDGHPKLGHKKDFPICQQVSNQCGFHVCHN 751


>08_02_0742 - 20630313-20630798
          Length = 161

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/75 (24%), Positives = 31/75 (41%)
 Frame = +2

Query: 275 PSACLVKTTIPPSPECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSR 454
           P    ++++ PP P C CG    S +       + T P++       ARR R      + 
Sbjct: 25  PDPPSLRSSTPPDPSCHCGPSAGSTAAEVPHAGYATPPSSSHGEEEAARRRRRGRGEEAD 84

Query: 455 GTEPTKTVESSTRAR 499
           G +P + V +  + R
Sbjct: 85  GVDPVRAVTTKRQRR 99


>06_03_0052 -
           16027570-16027617,16027789-16027795,16028103-16028341,
           16028432-16028566,16028670-16028888
          Length = 215

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 263 RLSHPSACLVKTTIPPSPECGCGAERSSCSRCRLI 367
           R  HP++ LV+ T PP P  G G    S SR RL+
Sbjct: 30  RAGHPTSALVRATAPPPPATGGG---GSSSRARLL 61


>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 269 SHPSACLVKTTIPPSPECGCGAERSSC 349
           SH   C+ K   PP P CGC     +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232


>10_06_0127 -
           11027692-11027826,11027925-11027993,11029925-11030011,
           11030146-11030286
          Length = 143

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 472 DGRKFNQGKIFK*C-RQTSSQCIHISYNNYKKLYKKETFKCK*VDVGNFRNCPQFIEFL 645
           D R+  +G+I + C  +T  QC  + + NYK +Y++       V V N  N    +EF+
Sbjct: 27  DERRALEGEIVRKCLARTDHQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFI 85


>05_01_0054 +
           379974-380215,380343-380556,381603-381892,382384-382560,
           382705-383481,383572-383645,383757-383819,383919-384007,
           384106-384201,384319-384978,385613-385687,386422-386492,
           386578-386635,386900-387104,387379-387869
          Length = 1193

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 389 TTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNADKRPAN 532
           T G  W  + +R R++    +RG +  + V+S  + R ++ A+ RP++
Sbjct: 197 TGGEGWEKKLKRKRSIGTVLNRGNDADRDVKSGGQHRPANEANPRPSD 244


>01_06_1249 -
           35714645-35716003,35716700-35716761,35717007-35717181,
           35717276-35717301,35717917-35717983,35719803-35719945,
           35720337-35720349
          Length = 614

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +2

Query: 335 ERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNA 514
           ER    +C +   WT S      W+L+ R P  LS   S+ ++    ++ +     S+  
Sbjct: 137 ERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQLSQLQDELKKAKEQLLSTEH 196

Query: 515 DKRPA 529
            KR A
Sbjct: 197 SKRRA 201


>08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799
          Length = 188

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 639 IFIKTSVINDFQSPCIHKCSAENDAALH 722
           + +K +++ D   PC  KCS EN+ +LH
Sbjct: 18  VLVKANILGDIY-PCPCKCSQENETSLH 44


>08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917
          Length = 188

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 639 IFIKTSVINDFQSPCIHKCSAENDAALH 722
           + +K +++ D   PC  KCS EN+ +LH
Sbjct: 18  VLVKANILGDIY-PCPCKCSQENETSLH 44


>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
          Length = 388

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 251 KSANRLSHPSACLVKTTIPPSPECGC--GAERSSCSRCR 361
           +SA   +H S  L     PPSPE  C   A    C+RCR
Sbjct: 25  RSAGSSTHRSHDLDDGPAPPSPESSCRSNAAVCGCARCR 63


>08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783
          Length = 188

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 639 IFIKTSVINDFQSPCIHKCSAENDAALH 722
           + +K ++  D   PC  KCS EN+ +LH
Sbjct: 18  VLVKANIFGDIY-PCPCKCSQENETSLH 44


>09_02_0589 +
           10969195-10969325,10971135-10971607,10971894-10972032,
           10972645-10972722,10972886-10973055,10973199-10973467,
           10973655-10973781,10973964-10974035,10975084-10975273,
           10975480-10975879
          Length = 682

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 576 RNIQM*IGGCWQFSELSSIYRIFIKTSVINDFQSPCIHKCSAENDAALHEKMITLAF 746
           RN+   IG CW+   L+ +Y    + S+ +  +         EN  A H  ++T+ F
Sbjct: 430 RNLVSLIGYCWERDHLALVYEYMAQGSICDRLRG----NIFVENQHASHYSILTITF 482


>02_05_0713 + 31159574-31160764
          Length = 396

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +1

Query: 277 VCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEET 426
           +C   +  + ++S +W W   +   P  SD   +  S+ W K D + +++
Sbjct: 345 ICAKSKGESFSMSKIWQWSNVKGKLPAGSDNCSETASFPWMKRDATGDKS 394


>03_06_0389 -
           33567385-33567969,33568052-33568402,33568646-33568848,
           33569044-33569299,33569459-33569671,33569757-33569882,
           33569965-33570102,33570191-33570536,33570630-33570896,
           33571192-33571378,33571457-33571556,33571659-33571909,
           33572242-33572428,33572562-33572573
          Length = 1073

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 226 YGYVPEVRQKRKQAFASVC 282
           YGY P ++QKR   F+S+C
Sbjct: 636 YGYEPPIKQKRPGYFSSLC 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,275,277
Number of Sequences: 37544
Number of extensions: 567983
Number of successful extensions: 1521
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -