Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30083
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774...    30   2.7  
10_02_0102 + 5314875-5315231                                           30   2.7  
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473...    30   2.7  
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534...    29   4.7  
10_01_0088 + 1087807-1088282,1088752-1088974                           29   6.2  
01_06_0613 + 30615335-30615980,30616072-30616231,30616350-306163...    29   6.2  
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055...    28   8.2  
02_02_0355 + 9312814-9313650                                           28   8.2  

>11_04_0007 -
           12074472-12074538,12074908-12075116,12077202-12077463,
           12077547-12078043,12078651-12078719,12079258-12079363,
           12080272-12080295,12081184-12081242,12081383-12081520
          Length = 476

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 292 GTI-PSSAGKSHRYASASCVRGRSTLLPYILLKYSKLRLRRNRILL 426
           GTI P   G+ H Y+   C   R  +LP +L  Y +  LRR   L+
Sbjct: 143 GTIKPEEEGERHPYSVLDCAAQREAILPSVL--YIQKTLRRRPFLI 186


>10_02_0102 + 5314875-5315231
          Length = 118

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -2

Query: 229 RGPRRPRSFPLYTSSPRRRWERRASKSADTTHVFEPIEDSA 107
           R PR P S    T   RRRW R  SK+A  T     +E +A
Sbjct: 31  RPPRSPHSATTVTRGGRRRWRR--SKTATATSTAAEVEAAA 69


>05_03_0370 +
           13144612-13144639,13144749-13145260,13146995-13147327,
           13147690-13147699,13149704-13149816,13151187-13151258,
           13151397-13151432,13151552-13151597,13151726-13151828,
           13151916-13151973,13152231-13152281
          Length = 453

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 66  RGSLAVCAKTRVKLALSSIGSKTCVVSALFDALRSHRRRGDEV 194
           RGS+A   +TR + + SS G +  +  ++ D LR+ RRRG  +
Sbjct: 100 RGSVAARRRTRRRRSGSSRGLRRILDDSVGDRLRASRRRGSVI 142


>02_01_0714 +
           5339408-5340020,5340117-5340319,5340408-5340605,
           5340703-5340774,5341197-5341292,5341828-5341907,
           5341993-5342068,5342152-5342362,5342562-5342755,
           5342834-5342939,5343037-5343126,5343470-5344206
          Length = 891

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 436 WRNARGSGCGAGAAWSTSAGCTEAECSSLLRSLQMHNDVIY 314
           +RN RGSG GAGA  + S G   AE S  L  +++    +Y
Sbjct: 116 YRNLRGSGSGAGAI-AASGGALLAEAS--LHDVRLQPGTVY 153


>10_01_0088 + 1087807-1088282,1088752-1088974
          Length = 232

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 445 KGCWRNARG--SGCGAGAAW 392
           +GCWR  RG   G G G AW
Sbjct: 113 RGCWRGRRGCRRGSGGGGAW 132


>01_06_0613 +
           30615335-30615980,30616072-30616231,30616350-30616398,
           30617561-30617674,30617975-30618031,30618227-30618337
          Length = 378

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +1

Query: 199 EENCEVGVVLERNSLIVLSLTRPSSASAGGIGT---IPSSAGKSHRYASASCVRGRS 360
           EE  EV + L+ +  IVL    P++A+A G+G      S+ G+     S+S  R RS
Sbjct: 40  EELVEVTLDLQDDDTIVLRSVEPAAAAAAGVGAGAGAASARGELTGGPSSSSSRSRS 96


>02_05_1231 -
           35104832-35105002,35105104-35105167,35105267-35105557,
           35105755-35105999,35106410-35106489,35106890-35107006,
           35107150-35108002,35108081-35108161
          Length = 633

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 561 RIFLRRLRKLARSLPCG*LSC 499
           R+F  RLRK AR+  CG +SC
Sbjct: 290 RLFASRLRKAARNRICGEMSC 310


>02_02_0355 + 9312814-9313650
          Length = 278

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 436 WRNARGSGCGAGAAWSTSAGC 374
           WR  RG GC AG    T+  C
Sbjct: 217 WRRGRGGGCDAGGGDGTAGRC 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,022,589
Number of Sequences: 37544
Number of extensions: 409212
Number of successful extensions: 1592
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)