Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30065
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 82 2e-16
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 69 3e-12
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 69 3e-12
07_01_1001 - 8460467-8460799 64 9e-11
07_03_0321 + 16757414-16757743 63 2e-10
01_06_0098 - 26416768-26416998 31 0.43
08_02_1093 - 24271826-24273427 30 1.3
12_02_1217 + 27082452-27083593,27085041-27085158 29 1.7
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 29 2.3
12_01_0140 - 1088400-1088843 29 3.1
10_08_0104 + 14824122-14824178,14824274-14824318,14824419-148245... 28 5.3
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 5.3
12_01_0141 - 1091579-1091983 27 7.1
05_01_0120 - 828834-831143 27 7.1
01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152 27 7.1
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 27 9.3
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 82.2 bits (194), Expect = 2e-16
Identities = 36/63 (57%), Positives = 53/63 (84%)
Frame = +2
Query: 65 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
M+ +AAYLLAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGRE
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60
Query: 245 KLS 253
K +
Sbjct: 61 KFA 63
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/64 (45%), Positives = 47/64 (73%)
Frame = +2
Query: 62 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR 241
+M++++AYLLA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 242 EKLS 253
EK +
Sbjct: 253 EKFA 256
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 68.5 bits (160), Expect = 3e-12
Identities = 28/63 (44%), Positives = 47/63 (74%)
Frame = +2
Query: 65 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
M++++AYL+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GRE
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 245 KLS 253
K +
Sbjct: 61 KFA 63
>07_01_1001 - 8460467-8460799
Length = 110
Score = 63.7 bits (148), Expect = 9e-11
Identities = 28/63 (44%), Positives = 43/63 (68%)
Frame = +2
Query: 65 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 245 KLS 253
L+
Sbjct: 61 MLA 63
>07_03_0321 + 16757414-16757743
Length = 109
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/63 (44%), Positives = 43/63 (68%)
Frame = +2
Query: 65 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 245 KLS 253
L+
Sbjct: 61 MLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 116 PAAADVEKILSSVGIEADGEKLKKVITELNGKD 214
P V KI+ +V IEAD + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>08_02_1093 - 24271826-24273427
Length = 533
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 62 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR 241
+ R AA +AV G+TT AAA + SS G + ++ + L +D +A R
Sbjct: 3 RKREAAAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARDAVASMALSR 62
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 83 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKL 181
Y+LA+ TPA +D E+ VG +ADG+ L
Sbjct: 27 YVLALSSSCNTPACSDEEEEDDEVGSDADGDDL 59
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 107 KTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 232
KTT E +L+ + DG+K KKV+ L ++VE+L++
Sbjct: 137 KTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKEEVERLLS 178
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 167 DGEKLKKVITELNGKDVEQLIA 232
DG+K+KKV+ L ++VE+L++
Sbjct: 36 DGKKMKKVVKRLGKEEVERLLS 57
>12_01_0140 - 1088400-1088843
Length = 147
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 107 KTTPAAADVEKILSSVGI--EADGEKLKKVITELNGKDVEQLIA 232
KTT D E++L + + DG+K KKV+ L ++VE+L++
Sbjct: 25 KTTTTEDDHEEVLLAYRPREKEDGKKRKKVVRRLGKEEVERLLS 68
>10_08_0104 +
14824122-14824178,14824274-14824318,14824419-14824536,
14825522-14825581,14825783-14825891,14825972-14826197,
14826274-14826390,14826510-14826611
Length = 277
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 92 AVLGGKTTPAAADVEKILSSVGIEADGEKLK 184
A+L GK TP D+E+ L + G GE++K
Sbjct: 14 ALLRGKETPVILDLEESLRAKGDMTQGEEVK 44
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 174 SPSASIPTELRIFSTSAAAGVVLPPSTASKYAA 76
+P+ IPT F T A V +PP+TA AA
Sbjct: 533 APAPPIPTPSMPFPTVPAPPVTVPPATAPSMAA 565
>12_01_0141 - 1091579-1091983
Length = 134
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 161 EADGEKLKKVITELNGKDVEQLIA 232
E DG+K KKV+ L ++VE+L++
Sbjct: 30 EEDGKKRKKVVRRLGKEEVERLLS 53
>05_01_0120 - 828834-831143
Length = 769
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 246 FSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 88
F P+++S +S+ S SPS S PT L + S+ L PS+ S
Sbjct: 503 FLSPSSLSSDSSISSKYSSDSPSLSPSTSSPTSLGLSPASSNFSHTLVPSSRS 555
>01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152
Length = 205
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -3
Query: 183 LSFSPSASIPTELRI--FSTSAAAGVVLPPSTAS 88
LS+SPSAS T+L I + + A V PPS++S
Sbjct: 114 LSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSS 147
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 19 LFFRHYTFRVN*DLKNALRGRVFTGCAGWQDHASCR*R*EDPQL 150
+ HY ++V K+ GRV T A WQD + R P L
Sbjct: 501 MLINHYKYQVWEVFKDKFSGRVATYVADWQDEENVGSRDRAPGL 544
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,927,456
Number of Sequences: 37544
Number of extensions: 170016
Number of successful extensions: 517
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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