Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20002
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0410 - 3234836-3234958,3235636-3235776,3235899-3235949,323...    32   0.41 
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654...    31   1.2  
05_01_0025 - 171012-171263,171361-171450,171536-171592,171907-17...    28   6.6  
02_02_0058 - 6423776-6423850,6424302-6424379,6426096-6426156,642...    28   8.8  

>12_01_0410 -
           3234836-3234958,3235636-3235776,3235899-3235949,
           3236045-3236125,3236427-3236483,3236898-3236993,
           3237204-3237379,3237630-3237703,3237909-3238016,
           3238100-3238236,3238396-3238446,3239032-3239142,
           3239291-3239363,3240322-3240398,3240641-3240706,
           3241349-3241463,3242255-3242511
          Length = 597

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 518 SK*PEKKTFENSYFLLFSVFGNKTHKQAGKHLAETLLSLTEGVSVTIETD 369
           +K P+++   +  FL   VFG K H   G  L  T+LS+ E V  T ++D
Sbjct: 109 AKDPDRRPAFHVRFLRLVVFGEKCHSTGGMMLTPTILSIEE-VDPTYDSD 157


>06_03_1142 +
           27961999-27962263,27963735-27965080,27965158-27965435,
           27965706-27965737,27965830-27966236,27966373-27966858
          Length = 937

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 398 EGVSVTIETDFGYKATVALYCVLDRHESTVRKKHSVPPNDFAFSVTDSSRRSTM 237
           E  ++ ++ D+G  A  AL   L    + +  K +VPPN  A ++ D   R+ M
Sbjct: 166 EVTAIFVDDDYGRGAVAALSDALALSRARISYKAAVPPNSNAATINDVLFRANM 219


>05_01_0025 -
           171012-171263,171361-171450,171536-171592,171907-171939,
           172050-172124,172219-172308,172421-172522,172725-172795,
           173326-173479,173587-173663,174183-174219
          Length = 345

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 337 VYSTVMSLPSGRSTRYPPTTLPSASPIRRAEV 242
           V   V SLP   +    PTT P+A P  RAEV
Sbjct: 229 VVRRVSSLPQSTALPALPTTAPAAEPSPRAEV 260


>02_02_0058 -
           6423776-6423850,6424302-6424379,6426096-6426156,
           6426239-6426330,6426440-6426670,6427510-6427950,
           6429037-6429591
          Length = 510

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 167 ALQEEQYPPMPYEYKYDVEDPEKTLYFGATN 259
           AL EE    +PY   Y+   PE +LY  A+N
Sbjct: 336 ALGEELQEKLPYNEYYEYFGPEYSLYVAASN 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,622
Number of Sequences: 37544
Number of extensions: 323094
Number of successful extensions: 829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)