Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00021
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 40 0.002
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 32 0.27
06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504... 31 0.83
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458 30 1.1
04_04_0881 + 29055724-29059197 30 1.5
02_05_0445 + 29088216-29088362,29089161-29089386,29089903-290899... 28 4.4
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 28 5.9
06_03_0381 - 20106714-20107088,20107177-20107594,20107721-201079... 28 5.9
02_01_0748 + 5566073-5567620 27 7.7
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +2
Query: 275 ALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHIRVGGKYFVDFQIPTTFRALW 454
AL + L D L+ F+ G+T+ D L PK+ H+ + ++ ++ +P + +
Sbjct: 193 ALLSELTSFDSYLKDNGP-FINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVK 251
Query: 455 RYMYHMYQLDAFTQS 499
+YM ++ +D+F ++
Sbjct: 252 KYMKTIFSMDSFVKT 266
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +2
Query: 332 FLTGDTMCCFDCELMPKVQHIRVGGKYFVDFQIPTTFRALWRYMYHMYQLDAFTQS 499
F+ G + D L PK+ H++V ++F ++IP + Y ++ ++F ++
Sbjct: 139 FINGQNISAADLSLAPKLYHLQVALEHFKGWKIPEDLTNVHAYTEALFSRESFIKT 194
>06_03_0559 +
22148773-22149210,22149478-22149684,22150065-22150471,
22150655-22151472,22151564-22151674,22151846-22152015
Length = 716
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 170 GTQP--IRAGQGGRVSNREPVFKTEAGAGSQDEQKSAALRAHLGRIDGLLERR 322
GT P + +G+GGRV R G SQ + + + +DGLL+RR
Sbjct: 111 GTFPDGLSSGRGGRVRQRSSSATAAPGRRSQRSNTAMSGEGYQAIVDGLLDRR 163
>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
Length = 619
Score = 30.3 bits (65), Expect = 1.1
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Frame = -3
Query: 329 WSPCVLEVHRCVRDELV----TPLISVHLANQHQLQF*IQXXXXXXXXXXLHE*VVSPWH 162
W C+ E+ RC R LV T L +++LAN ++ + S +
Sbjct: 470 WLACLEELPRCSRVILVWHIATSLCAINLANDRRIN------------------LTSKFQ 511
Query: 161 GLHDVTFDL--FVLKYRQPIIDQYGRVCRFEVGAEIWGRLLHVH 36
HDV L + +I + G+ C +E+ AE+WG L+ VH
Sbjct: 512 KAHDVANFLSEYCALLANALIKKEGQACLWEILAEVWGHLI-VH 554
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 374 MPKVQHIRVGGKYFVDFQIPTTFRALWRYMYHMYQLDAFTQSCPA 508
+P++Q++ + G F +P F +LW + +++FT S PA
Sbjct: 536 LPQLQYVSLAGNSFSG-DVPEGFSSLWSLRHLNLSVNSFTGSMPA 579
>02_05_0445 +
29088216-29088362,29089161-29089386,29089903-29089976,
29090129-29090353
Length = 223
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 350 MCCFDCELMPKVQHIRVGGKYFVDFQIPTTFRALWRYMYHMYQLDAFTQSCP 505
MCC+ L QH+ + V + + F A+W ++++ +AF S P
Sbjct: 145 MCCYLSWLRVS-QHLHTLNQVLVGAIVGSAFGAMWFALFNLLVQEAFASSVP 195
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 164 HGL-HDVTFDLFVLKYRQPIIDQYGRVCRFEVGAEIWGRL--LHVHCCH 27
HG+ H + F + + +ID YG+ C F+ I+ + + + CC+
Sbjct: 1020 HGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCN 1068
>06_03_0381 -
20106714-20107088,20107177-20107594,20107721-20107970,
20108109-20108169,20108346-20108422,20108557-20109007
Length = 543
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 149 HHEVRARGTQPIRAGQGGRVSNREPVFKTEAGAGSQDEQ-KSAALRA 286
HH +R RG AG G ++ +PV +EA GS E+ K+ A A
Sbjct: 385 HHHLRWRGGA---AGSGNTTASSDPVVASEAALGSLLERAKTKATEA 428
>02_01_0748 + 5566073-5567620
Length = 515
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 EQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHIRVGGKYFVD-FQIPT 436
E+K LR + RI+ +E E R +TG + + EL+ + G+YF+D F + T
Sbjct: 34 EEKLRRLRRLVVRIESAVEAAEARRITGRALLAWLSELVDGA----LQGRYFLDAFPVAT 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,321,306
Number of Sequences: 37544
Number of extensions: 312633
Number of successful extensions: 1010
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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