Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00019
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1092 - 30331323-30331463,30331562-30331648,30331825-303320...    38   0.009
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    36   0.037
01_01_1237 - 10047417-10047934,10048899-10049136                       28   7.4  
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279...    27   9.8  
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273...    27   9.8  

>03_05_1092 -
           30331323-30331463,30331562-30331648,30331825-30332085,
           30332231-30332636,30333702-30334240
          Length = 477

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   PPRGFMAPTAWNVLAEYYQSMKSKMDTN 87
           PP GFM P  W VL EYY S+    D++
Sbjct: 442 PPDGFMCPGGWKVLVEYYDSLTPSADSS 469


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 4   PPRGFMAPTAWNVLAEYYQSMKSK 75
           PP GFM P  W VL +YY S++++
Sbjct: 325 PPDGFMCPGGWKVLVDYYNSLQTE 348


>01_01_1237 - 10047417-10047934,10048899-10049136
          Length = 251

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -2

Query: 375 KQFQL--FVLFKS-QNHEVLQNFNDTIFR*LNYQHSIPN 268
           K F L  F++F + +NH V+Q  N+T+++  +Y  S P+
Sbjct: 71  KNFSLGDFLIFNTDKNHSVVQTRNETLYKSCDYNDSGPD 109


>05_07_0194 +
           28327328-28327376,28327699-28327742,28327852-28327961,
           28328250-28328287,28328371-28328448,28328527-28328580,
           28328663-28328764,28329152-28329237,28329327-28329430,
           28329542-28329610,28329689-28329804,28329949-28329983,
           28330152-28330294,28330473-28330598,28330700-28330784
          Length = 412

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 411 KPQTIVSTEEK*KQFQLFVLFKSQNHEVLQNFNDTIFR 298
           K  TI   E + K+F L  ++KS N  +    N T+FR
Sbjct: 74  KCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFR 111


>01_06_0109 -
           26526691-26526775,26526894-26527019,26527228-26527370,
           26527521-26527555,26527676-26527791,26527868-26527936,
           26528070-26528173,26528253-26528338,26528429-26528530,
           26528609-26528662,26528763-26528840,26528936-26528973,
           26529235-26529344,26529463-26529506,26530232-26530280
          Length = 412

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 411 KPQTIVSTEEK*KQFQLFVLFKSQNHEVLQNFNDTIFR 298
           K  TI   E + K+F L  ++KS N  +    N T+FR
Sbjct: 74  KCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFR 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,853
Number of Sequences: 37544
Number of extensions: 183218
Number of successful extensions: 313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)