Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00014
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135...    29   2.1  
11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858           29   2.1  
06_02_0023 + 10702040-10702364,10702530-10702747,10703643-107041...    29   3.6  
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    28   4.8  
01_06_0517 + 29981537-29981927,29982024-29982231,29982373-299825...    28   6.3  
07_03_0944 + 22787933-22789906                                         27   8.4  

>12_01_0183 -
           1350451-1350477,1350887-1350969,1350977-1352696,
           1354258-1354428,1355892-1355939
          Length = 682

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 114 DELVIVEVPTKGGLRNDEDDTSVLI 40
           DE + V + + GG  ND+DDT +L+
Sbjct: 259 DETLAVCIISSGGYENDDDDTDILV 283


>11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858
          Length = 675

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 114 DELVIVEVPTKGGLRNDEDDTSVLI 40
           DE + V + + GG  ND+DDT +L+
Sbjct: 244 DETLAVCIISSGGYENDDDDTDILV 268


>06_02_0023 +
           10702040-10702364,10702530-10702747,10703643-10704190,
           10704272-10704523,10704611-10704721,10704812-10704893,
           10704969-10705061,10705146-10705340
          Length = 607

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = -2

Query: 240 IVFNDIHAIFDIYKPTFQYVNNSSSKMCINKTRCEFDIGFFSDELVIVEVPTKGGLRNDE 61
           I FND+HA F + K     V        ++  R E  IG+ +  +V     T   +R  E
Sbjct: 340 ISFNDLHAFFKMDKMDINLVGTWCLSQWVDAQRTEASIGYVNPTMVCETAHT---VRISE 396

Query: 60  DDTSVLISVCLPRKSVYI 7
            D++VL +     K  YI
Sbjct: 397 -DSAVLKNKTHQEKKDYI 413


>03_02_0067 +
           5364713-5364936,5365513-5367016,5367207-5368250,
           5368467-5368577,5368997-5369068,5369719-5369737,
           5369838-5371142,5371317-5371397,5372441-5372604,
           5373363-5373466,5373537-5373628,5374079-5374216,
           5374370-5374426,5374820-5375046
          Length = 1713

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -3

Query: 404 NLYDCYQDNIL---MNEYFPFSIQCNSTNYLEETTILKVIHEVLVDGYYY 264
           N++  + D IL   +      + Q NS  + ++ T+LKV+ E+L +G ++
Sbjct: 262 NIFRTFVDRILDPLLELLVLLNSQVNSLTHKQDRTMLKVVEEILSNGLFH 311


>01_06_0517 +
           29981537-29981927,29982024-29982231,29982373-29982544,
           29984468-29984533,29984658-29984771,29984880-29984996,
           29985097-29985223,29985317-29985603,29985701-29985891,
           29985981-29986063,29986175-29986251,29986729-29986896
          Length = 666

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 475 TPVSRIVLGLCIWCVYLFFAAFYLCLM*IVISS 573
           TP+S +V+ +CI  V LF A  +     + +SS
Sbjct: 414 TPMSNVVMSVCIMLVLLFLAPLFKYTPLVALSS 446


>07_03_0944 + 22787933-22789906
          Length = 657

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 201 KPTFQYVNNSSSKMCINKTRCEFDIGFFSDELVIVEVPTKGGLRNDEDDTS 49
           +P+     NSS+   +     + D G  S+ELV +  P + G   DE D S
Sbjct: 550 RPSVGSPRNSSAWGTVGSPMGKVDWGVDSEELVRLRRPAQPGFGEDETDVS 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,872,666
Number of Sequences: 37544
Number of extensions: 264342
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)