Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00013
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1022 - 8815675-8816809,8819696-8819907                           29   5.3  
04_01_0055 + 576483-576584,576684-576865,576950-577316,577391-57...    29   5.3  

>07_01_1022 - 8815675-8816809,8819696-8819907
          Length = 448

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 547 WGLRQRERSSTERVILLGRPTVRMLLFGT 633
           W LR   RS+ ER++  GRP  R L+  T
Sbjct: 290 WPLRAAFRSAIERLLTSGRPRPRTLVLAT 318


>04_01_0055 +
           576483-576584,576684-576865,576950-577316,577391-578065
          Length = 441

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 569 DLPPSG*YYSVDRRSECCCSELVYTKAYLEHVVSEIRAYVKYLVCYDGY 715
           DLP +G YYS  RR+  C     +  A    VV  I+A    +V  DGY
Sbjct: 313 DLPAAGDYYSFMRRARFCLCPSGHEVA-SPRVVEAIQAECVPVVIADGY 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,876
Number of Sequences: 37544
Number of extensions: 360606
Number of successful extensions: 714
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)