Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00005
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    29   1.6  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    28   2.9  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    28   3.8  
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415...    28   3.8  
12_01_0527 - 4177928-4178235,4178849-4181438                           27   5.0  
08_02_0897 - 22362136-22363698                                         27   6.6  

>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 82  HQHHHFWT*ANFHH*QQEARVTKHPL-QHHHLRALNPMLVW 201
           H HHH  + +   H    A     P+  HHHL  ++P  V+
Sbjct: 169 HHHHHHHSGSRKRHSMPPAYTAAEPVSHHHHLVVVDPSTVY 209


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 110 RISITNSKRRG*PSTHYSTTTSGL*TLCWYGEAADIGTIR 229
           R S +N  R+G P    +TT+S L     YG AA++ TI+
Sbjct: 288 RSSSSNQSRQGTPPATNATTSSYLPEPIVYGRAAEMETIK 327


>08_02_0749 -
           20769224-20770535,20770649-20771510,20771622-20773263,
           20773357-20773701,20773858-20773952,20774218-20774344,
           20774430-20774435
          Length = 1462

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 127 VSDGNSLRSRSGGVDVSPPSPKTEW 53
           V++ N   SR+GG DVSP + K  W
Sbjct: 860 VANFNGKHSRNGGGDVSPAALKCSW 884


>06_01_0581 -
           4153668-4153883,4154070-4155104,4155718-4156292,
           4158457-4158826,4159925-4160590,4161008-4161223,
           4161725-4161793
          Length = 1048

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 51  YHSVFGEGGDTSTPPLLDLSEFPSLTARGA 140
           Y++V G GG T+ PP  + + + SL   GA
Sbjct: 240 YYAVAGNGGATAAPPAPEPAAYRSLLGDGA 269


>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 3   SMSSMSNLSRFNAGNNYHSVFGEGGDTSTPPLLDLS 110
           S+S++++L+RF A  N  + F   G T    +LDLS
Sbjct: 277 SVSNVASLARFAANQNNFTGFIPSGITKNVKMLDLS 312


>08_02_0897 - 22362136-22363698
          Length = 520

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 3   SMSSMSNLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEF 116
           S  SM+ ++R   G  +   FGEG D +  P+  LSEF
Sbjct: 181 STLSMNVITRMVLGKRF---FGEGADAAEGPVSTLSEF 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,014,975
Number of Sequences: 37544
Number of extensions: 167259
Number of successful extensions: 488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)