Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00004
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0649 + 4698384-4698780,4699047-4699144,4699673-4699697,469...    29   5.5  
11_06_0037 - 19478885-19480472,19483125-19483267                       28   9.6  

>06_01_0649 +
           4698384-4698780,4699047-4699144,4699673-4699697,
           4699809-4699929,4700022-4700156,4700392-4700602
          Length = 328

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 152 RWFFVFILQNPNSC*LFDCVLNGTRLLLLEKHNSCSW 262
           R F   +L + N     DC  +G R+LL + HNS  W
Sbjct: 259 RSFGAQVLIDDNPRYALDCAEDGMRVLLFDYHNSYPW 295


>11_06_0037 - 19478885-19480472,19483125-19483267
          Length = 576

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 206 CVLNGTRLLLLEKHNSCSWFMQSLCE 283
           CV+ GTR+L+L  H    W +  L E
Sbjct: 540 CVVGGTRVLVLGGHTGEEWILNELHE 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,925,038
Number of Sequences: 37544
Number of extensions: 338949
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)