Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0208.Seq
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    32   0.60 
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983     31   0.80 
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    29   5.6  
01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382...    29   5.6  

>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 369 ETFYKTACFARVHLNQGQFLYAF-YIAVIQRSDCHGF 476
           ETF+ TAC  R HL QG+ + A+ Y+   +  DC GF
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GF 462


>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
          Length = 145

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 535 LQHFHIHKHLGYTSYGAGTTKPWQSERWITAM 440
           L + H H H G    GAG  K W S  W TA+
Sbjct: 107 LPYDHCHHHCGDEGSGAGFLKGWFSVSWTTAI 138


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +2

Query: 386 CLFCACASQSRSILVCLLHRCYPA 457
           CLFC     SR ILVC L RC  A
Sbjct: 58  CLFCEANFISRRILVCDLLRCLVA 81


>01_06_1640 +
           38836977-38836988,38837694-38838047,38838164-38838294,
           38838554-38838860,38839036-38839349,38839507-38839645
          Length = 418

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 145 DVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLRCT 264
           D SQ   + +   IG  +DI++  +++T  KAV++  R T
Sbjct: 12  DSSQFLLNGDGSVIGSPFDIQLECNSFTGSKAVQDHSRYT 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,689,972
Number of Sequences: 37544
Number of extensions: 359784
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)