Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0200.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    33   0.20 
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437...    30   2.5  
03_05_0938 - 28978696-28978809,28978942-28979028,28979124-289792...    29   4.3  
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    28   9.9  

>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 284 RCPWSPGAKVIGVLHAVHLVVSYQFV 207
           RC WSP   ++GV  + H+V +Y FV
Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455


>06_01_0605 +
           4373697-4373872,4374840-4374876,4375296-4375399,
           4375942-4376137,4376385-4376451,4376895-4376998,
           4377090-4377174,4377309-4377369,4377694-4377825,
           4377924-4377993,4379261-4379413,4379583-4379694,
           4379779-4379920,4380023-4380140,4380862-4380957,
           4381061-4381189
          Length = 593

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 183 SEVITNVVNKLIRNN--KMNCMEYAYNFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 353
           SE I+++ N+L R+   K+ C     N  S A      I S+L S LS+  TRL  CTS
Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400


>03_05_0938 -
           28978696-28978809,28978942-28979028,28979124-28979256,
           28979592-28979865,28980242-28980368,28980523-28980773,
           28980854-28980935
          Length = 355

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -2

Query: 760 GTSRINSCRCNPKAMR*PEGLNRPRQCQSXAVFTXVDVEQDVIVVLSRLQVPLGSETIDA 581
           G    N     P+A   P G N PR   + A    +DV    +  L+RL    G  ++  
Sbjct: 13  GAPAANPAAPPPRAPGPPRGPNAPRAGGAPAKVLPIDVPAVALAELNRLTGNFGDRSL-- 70

Query: 580 VDSEGPYGR 554
              EG YGR
Sbjct: 71  -VGEGSYGR 78


>06_03_0095 -
           16575938-16576585,16577028-16577219,16577294-16577392,
           16577496-16577618,16577717-16577929,16578143-16578251,
           16578339-16578427,16578604-16578880,16578974-16579084,
           16579160-16580508,16581218-16581631
          Length = 1207

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -2

Query: 394 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL*AYSMQFILLFRI 215
           +L +IA   S    +  K + + GE K    W   PDD     +PK  A +  F LL  +
Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372

Query: 214 SLFTTFVMTSLFFS 173
            L++ F+  SL+ S
Sbjct: 373 MLYSYFIPISLYIS 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,977,404
Number of Sequences: 37544
Number of extensions: 352345
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)