Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0195.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499...    48   9e-06
08_02_1084 - 24232968-24234779                                         30   2.5  
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913...    29   3.2  
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219...    29   5.7  
03_03_0060 - 14157352-14158851                                         29   5.7  
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613...    28   9.9  

>03_02_0984 +
           12947444-12947530,12949071-12949127,12949833-12949904,
           12950050-12950112,12950955-12951131,12951503-12951628,
           12951711-12951777,12952019-12952215,12952617-12952691,
           12954524-12954554,12954714-12954802,12955120-12955188,
           12955306-12955425,12955963-12956081,12956303-12956441,
           12956538-12957038,12957293-12957592,12957694-12957875,
           12958277-12958388,12958953-12959072
          Length = 900

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
 Frame = +2

Query: 278 LTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKVGKWNAARYCLRFI 457
           L  CA ++P K   +  L+GL+N +N +F    VD      ++ L     +  R  LRF+
Sbjct: 31  LLQCADQLPHKIPFFGVLIGLINLENEDFSKGIVDTTHANLQDALHNENRDRIRILLRFL 90

Query: 458 ADLVNCHVLAASSLLTL*RH**ILLMKMEYLTSEGIG---------LYL-AVLSALPWVG 607
             L+   V+  +S++        LL     +  E  G          Y+  +L++LPW G
Sbjct: 91  CGLMCSKVVLPNSIIETFE---ALLSSAATILDEETGNPSWQPRADFYVYCILASLPWGG 147

Query: 608 REXYXKKXSQLDHLLVTIEGFL 673
            E + +   + + +LV I+ ++
Sbjct: 148 SELFEQVPDEFERVLVGIQSYI 169


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 18  REKSKICDTHSDFIMNRRRGHDDEEGYERLHRKRRRVSENQEIEDR 155
           R++ +  D   D    R R  DD + Y   HR R R SE  E  DR
Sbjct: 534 RDRDRERDRERDRERERDRHRDDRDRYGDYHRHRDRDSERNEDWDR 579


>07_03_0715 +
           20889399-20890111,20890950-20891060,20891128-20891338,
           20891414-20891474,20891719-20891956,20892046-20892196,
           20892415-20892703,20893464-20894207,20894720-20894851,
           20895728-20895965,20896159-20896246,20896422-20896697
          Length = 1083

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 221 ISKCTGSRFEYLRVKILRILTDCAIRMPEKCTI 319
           ++     +FE L  K+LR LTD A+  PE+  +
Sbjct: 727 VTASVAKQFEDLVTKVLRALTDAAVSRPERYAV 759


>06_03_0980 +
           26520832-26520922,26521021-26521409,26521612-26521927,
           26522869-26523769,26524103-26524184
          Length = 592

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 529 ANEDGVPHVRRDWFVFGGAVSITLGW 606
           A+EDGVP+VR    V GGA SI  G+
Sbjct: 123 ASEDGVPNVRAR--VLGGATSINAGF 146


>03_03_0060 - 14157352-14158851
          Length = 499

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = -2

Query: 193 LLFSPTLKIKDSKRSSISW---FSDTRRLFRWRR 101
           LL +P L + D++R  I W   FSDT RL++WRR
Sbjct: 125 LLIAPQL-LDDAERDII-WLTNFSDTIRLYQWRR 156


>05_07_0095 -
           27659944-27660795,27660900-27661172,27661280-27661354,
           27661683-27661837,27661935-27662051,27662148-27662487
          Length = 603

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -2

Query: 115 FRWRRSYPSSSSCPL 71
           FRWRRS  SSSS PL
Sbjct: 15  FRWRRSTSSSSSSPL 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,903,959
Number of Sequences: 37544
Number of extensions: 381967
Number of successful extensions: 934
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)