Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0193.Seq
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295...    30   2.6  
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302...    29   4.5  

>07_03_0950 +
           22828787-22828982,22829091-22829164,22829512-22829570,
           22830148-22830487,22830623-22833376
          Length = 1140

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 290 NSTXXSVLPSSGXPFSTLEAAREATNTPSRHSAGXLSXTLVSCRRSTTNXICND 451
           NST  +   SS  PFS+ +    +TN     SAG LS T V   +  T   C +
Sbjct: 675 NSTAENTTDSSTCPFSSEQVDETSTND---GSAGQLSGTFVDANKVNTFISCEE 725


>06_03_1404 -
           29928792-29929040,29929147-29929551,29930130-29930280,
           29930363-29930501,29930578-29930743,29930826-29931041,
           29931142-29931323,29931412-29931538,29931974-29932112,
           29932227-29932353,29932501-29932612,29932704-29932784,
           29933330-29933483,29933569-29933689,29934003-29934045,
           29934356-29934460
          Length = 838

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/60 (38%), Positives = 33/60 (55%)
 Frame = +2

Query: 44  NVGKEMLIYLKT*KNTIKKKRFCLIRGWLTRRHLGAIKLVSELADEDPESYKNXFRMSED 223
           NV +EML    + K TIKKK   LIR         A+ ++ +LA+EDP+ Y N  +  E+
Sbjct: 480 NVSREMLQQHSSLK-TIKKK---LIRK--------ALDMIRKLAEEDPDEYSNKDKTDEE 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,125,054
Number of Sequences: 37544
Number of extensions: 274214
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)