Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0059.Seq
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     60   4e-10
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    58   1e-09
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715...    25   8.3  
05_07_0144 - 28007477-28008412                                         25   8.3  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 31/63 (49%), Positives = 39/63 (61%)
 Frame = +3

Query: 3   DLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRXMGESDDCI 182
           DLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        + + G IR  G++D  +
Sbjct: 10  DLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIRAQGDADSAL 68

Query: 183 VRL 191
            RL
Sbjct: 69  DRL 71


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 30/63 (47%), Positives = 38/63 (60%)
 Frame = +3

Query: 3   DLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRXMGESDDCI 182
           DLY PRKCS +NR+I AKDHASVQ+ I  VD   G        + + G IR  G++D  +
Sbjct: 10  DLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIRAQGDADSAL 68

Query: 183 VRL 191
            RL
Sbjct: 69  DRL 71


>06_02_0322 +
           14369221-14369540,14370240-14370918,14371347-14371573,
           14372121-14372312,14372394-14372550,14373860-14374093
          Length = 602

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 6   LYCPRKCSASNRLIHAKDHASVQLVIADVDPA 101
           + C R  +ASN     K HAS    ++DVD A
Sbjct: 158 ILCVRSGTASNPADSGKVHASHGFYVSDVDAA 189


>05_07_0144 - 28007477-28008412
          Length = 311

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 154 RIAPQTTYILDVSAARPVAGSTSAITSCTE 65
           ++APQTT I   ++A  V  STSA  +  E
Sbjct: 53  QLAPQTTTITTSNSAAAVGNSTSASGTTAE 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,598,293
Number of Sequences: 37544
Number of extensions: 97309
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)