Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0050.Seq
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322...    32   0.48 
06_02_0225 + 13257655-13260693                                         31   0.83 
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334...    31   1.1  
06_03_0969 - 26413534-26413594,26415020-26415318                       29   3.3  
12_02_0848 + 23636478-23638058                                         28   5.9  
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89...    28   5.9  
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    28   7.7  
01_07_0110 - 41134504-41135763                                         28   7.7  

>09_03_0096 +
           12328116-12329561,12329810-12329852,12332119-12332237,
           12333326-12333853
          Length = 711

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +1

Query: 295 KRPPAFTMAPRRELKPPTAAVPGXGXYCPXKVCVTLPWAPGTYIWNSKLSVRXAKQLTTQ 474
           K  PA   A   EL PP AA PG   YC      T    P T +++    +R A +    
Sbjct: 187 KPTPAIASAESDELPPPAAAAPGQRGYCHYHT-TTASATPDTALFDPDNFMRLAMRQGPG 245

Query: 475 HLKGI 489
            + G+
Sbjct: 246 SVSGV 250


>06_02_0225 + 13257655-13260693
          Length = 1012

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 135  YWVLXFYSPVREGLHGDXLKTRSVVKDRPCGLIRFVVTRLWVS 7
            +WVL  Y P  +GL G   +T ++V     GLI   V+ LW++
Sbjct: 956  FWVLAHYYPFAKGLMGRRGRTPTIVYVW-AGLISITVSLLWIT 997


>01_06_1796 -
           39932487-39932633,39933150-39933201,39933370-39933495,
           39933645-39933743,39934039-39934258,39934599-39934764,
           39935108-39935161,39935527-39935657,39935747-39935818,
           39936524-39936602,39936705-39936783,39936868-39936902,
           39936986-39937111
          Length = 461

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 337 KPPTAAVPGXGXYCPXKVCVTLPWAPGTYIWNSKL 441
           +PPTA  PG   + P    V +  A  T IWNS++
Sbjct: 263 EPPTAVNPGVAPHAPTNAAVEMA-AQNTDIWNSQM 296


>06_03_0969 - 26413534-26413594,26415020-26415318
          Length = 119

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 286 AXTKRPPAFTMAPRRELKPPTAAVPGXGXYCP 381
           A  +RPPA    P+ + + P A   G   +CP
Sbjct: 75  AAARRPPAMARGPQAQARRPPAMAQGSFCHCP 106


>12_02_0848 + 23636478-23638058
          Length = 526

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = -2

Query: 194 VPAVXLPSSAXTKYRWH--RTSIGCXSFTPRSG 102
           VP    P SA T+YRWH  R       F P  G
Sbjct: 406 VPVFFHPGSAYTQYRWHLPRDHAAYSVFVPEDG 438


>02_01_0121 +
           890391-890429,890565-890730,891209-891769,892365-892845,
           892952-893033,893818-894021
          Length = 510

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 282 SCIXEASTCLHDGS*TRTKTTHCSGSRXR 368
           S I E+S+ L  GS  R++ TH  GSR R
Sbjct: 84  STISESSSSLETGSGHRSRDTHSMGSRVR 112


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 120 TXAPNTCSMPPVLGXSGRREXNSWHRLSVSQVLESFLK 233
           T  P T   P  L    R + N+WH+L      E+  K
Sbjct: 127 TEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQK 164


>01_07_0110 - 41134504-41135763
          Length = 419

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +1

Query: 259 TYXTDXXAAAXTKRPPAFTMAPRRELKPPTAAVPGXGXYCPXKVCVTLPWAPGT 420
           T   D   A+ + + P   +A     + PT  V G G  C   VC   P+ P T
Sbjct: 73  TCAADHLPASLSCQDPTCVVA--NAYRAPTCKVTGGGGDCSKNVCTAYPYNPVT 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,702
Number of Sequences: 37544
Number of extensions: 302205
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)