Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0037x.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526...    28   6.5  
04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108           27   8.6  

>03_05_0834 -
           28051067-28051381,28051675-28052120,28052330-28052671,
           28053170-28053310,28053419-28053489,28053575-28053640,
           28053874-28054017,28054149-28054207,28054246-28054369,
           28054730-28054862,28055138-28055187,28055715-28055824,
           28057355-28057436,28057536-28057705,28057812-28058498,
           28058645-28058794,28058908-28059039,28059444-28059594,
           28060253-28060344,28062478-28062585
          Length = 1190

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +1

Query: 91  YLIVDSLRSYSNFALAISPINGNASLRYRPPDRNRDARRTCG*KLKVVYLWTSSQSSWS- 267
           +L+VDS ++       + P+NGN       P++  DA +      +   L    +S  S 
Sbjct: 339 HLVVDSSKAKRTHGEHLEPLNGNGKRFANDPEKESDALQKVTFDQQCDLLACDGESVCSN 398

Query: 268 --GGPTISTRTVSSACG 312
               P  S   + SACG
Sbjct: 399 CDSTPYSSLTPIDSACG 415


>04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108
          Length = 510

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 100 VDSLRSYSNFALAISPINGNASLRYRPPDRNRD 198
           + ++ SY +FA+  +P++ +A L   PPD + D
Sbjct: 18  IGTVLSYIHFAIPDAPVSSHARLSALPPDDDDD 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,558,081
Number of Sequences: 37544
Number of extensions: 182759
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)