Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0075
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842...    31   0.70 
12_02_0122 + 13923510-13925081                                         28   6.5  
05_07_0296 - 29061900-29061923,29062026-29062440,29062529-290625...    27   8.6  
03_02_0900 - 12262149-12262565,12262924-12263061,12263387-122634...    27   8.6  

>09_02_0607 -
           11183382-11183387,11183481-11183637,11184220-11184284,
           11184397-11184469,11184759-11184905,11185515-11185562,
           11185637-11185716,11186112-11186439,11186525-11186576,
           11187397-11187523,11187613-11187990
          Length = 486

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 121 GFQRVPPLSCYPGHAKLSYSAPWSPD 44
           GF+R+P L C+P   +L+    WSP+
Sbjct: 202 GFKRIPSLECWPDVLQLTEPENWSPN 227


>12_02_0122 + 13923510-13925081
          Length = 523

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 478 ARRIWPGLRT*QRSIQVFRDCRS*IXSRFLETRLWYYPS 594
           ARR+   L    RS+QV  D    +   F    LW+YPS
Sbjct: 85  ARRLKADLGRDARSVQVSVDDHQEVTDSFRGATLWWYPS 123


>05_07_0296 -
           29061900-29061923,29062026-29062440,29062529-29062566,
           29062689-29062741,29062851-29063034,29064486-29064669,
           29064761-29064916,29064998-29065173,29065277-29065454,
           29066015-29066421
          Length = 604

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 264 LSEKILYSHLDDPKGQEIERGASYLRLRPDRVA-MQDATAQMAMLQFISSGLPRVAVPST 440
           LS  +L+S  DDP+  +    AS + L PDR+A +  A A        S G P  A    
Sbjct: 20  LSRALLFSQ-DDPEPVKRPDEASSISLPPDRIAIIAAAPAPSPATAAASDGSPAPA-QDE 77

Query: 441 IHCD 452
           + CD
Sbjct: 78  VRCD 81


>03_02_0900 -
           12262149-12262565,12262924-12263061,12263387-12263446,
           12263557-12263619,12264181-12264243,12264420-12264482,
           12265076-12265153,12265673-12266080
          Length = 429

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +3

Query: 294 DDPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLP-RVAVPSTIHCDHLIEAQ 470
           DD      E    Y    PDR A  D+T    ++  +  G+P +   P+  H +H + + 
Sbjct: 50  DDAMSTVGEEAPQYQNHEPDRQANHDSTNTDDVMSSVGEGIPFQNLDPAMTHENHKVSST 109

Query: 471 VGGEKDLARAKDLT 512
              ++      D T
Sbjct: 110 AHADQRSVEMSDST 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,060,561
Number of Sequences: 37544
Number of extensions: 366244
Number of successful extensions: 947
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)