Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0073
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0750 + 5574707-5576017                                           29   2.4  
05_01_0475 - 3818121-3820565                                           28   4.3  
11_01_0788 + 6599962-6602700                                           27   7.5  
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    27   9.9  
02_02_0640 - 12528075-12528363,12531326-12532311                       27   9.9  

>02_01_0750 + 5574707-5576017
          Length = 436

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 354 TTNFFLWLAIMFLYDYRRFIYVDKLSIFSCFYYDLVS 244
           T  FF++ + +FL   +RFIY+D L    C Y D+ S
Sbjct: 302 TKPFFMYKSKLFLGSQKRFIYIDILDGTVC-YVDIPS 337


>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 122 LKMDMNNPPNQSYWFVLREDQSNVILS-TNNFVNQNPQ 232
           + +  +NPPN  YW    E  S+ ++S  N  +N NP+
Sbjct: 209 IDLSRSNPPNM-YWSWSSEKSSSALISLLNQLININPE 245


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 147 GGLFISIFNEKYLNN--YKYLHDSVLKNRRIVFSMKTLYT*LQGY 19
           GGLF S+  E Y+ N  YK L D ++ N  I   +   Y  L G+
Sbjct: 382 GGLFSSVKLESYIWNEMYKQLGDELVNNDHIRAILNLSYRDLPGH 426


>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
            34664499-34664647,34664784-34664879,34665406-34665476,
            34665637-34665698,34665778-34665841,34665950-34666034,
            34666129-34666255,34666381-34666454,34666539-34666599,
            34666683-34666771,34666897-34667206,34667763-34667815,
            34668299-34668370,34668648-34668914,34669015-34669047,
            34669163-34669245,34669522-34669594,34669834-34670170,
            34670302-34670633,34670816-34671135,34671261-34671612,
            34671691-34671906
          Length = 1170

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 343  KVCSTTKDVFWDRSKIRLLLKLCLEDRFKNINKXKTLWLTLHRCRYY 483
            K+CSTT+ ++     ++ L + C     K +      W  L   R+Y
Sbjct: 1058 KICSTTEQLYHSEEHLKALARFCAFQLAKILIDNGFSWDNLTMLRFY 1104


>02_02_0640 - 12528075-12528363,12531326-12532311
          Length = 424

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 202 TKYHIALIFSKYKPIALIWRVVHIH 128
           +K  +AL F  Y P A +WRV+  H
Sbjct: 381 SKKRLALEFQVYNPAAKMWRVLTTH 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,004,444
Number of Sequences: 37544
Number of extensions: 210353
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)