Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0056
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 82 2e-16
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 69 2e-12
01_06_0783 + 31975261-31975398,31975583-31975726 56 1e-08
01_05_0324 - 20946774-20946935,20947301-20947780 55 4e-08
02_04_0361 - 22359278-22359439,22362291-22362728 47 7e-06
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 32 0.29
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 28 3.6
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 27 6.3
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 27 8.4
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925... 27 8.4
02_01_0791 - 5930553-5930802,5931042-5932351 27 8.4
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 82.2 bits (194), Expect = 2e-16
Identities = 36/56 (64%), Positives = 43/56 (76%)
Frame = +2
Query: 86 KAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
K +K+ADM EEM+Q+A D A A EK +EKDIA +IKKEFDK + PTWHCIVGR
Sbjct: 46 KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGR 101
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/59 (54%), Positives = 40/59 (67%)
Frame = +2
Query: 74 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 250
+ K IK+A+M EEM+Q+A D A EK +EKDI +I KEFDK + PTWHCIVG
Sbjct: 54 LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYI-KEFDKNHGPTWHCIVG 111
>01_06_0783 + 31975261-31975398,31975583-31975726
Length = 93
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Frame = +2
Query: 74 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIV 247
M + KA++++ DM +MQ A+ A +AL++F++ + IAA IKKEFD + P W C+V
Sbjct: 1 MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVV 60
Query: 248 G 250
G
Sbjct: 61 G 61
Score = 35.1 bits (77), Expect = 0.032
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFK 333
G+ FG Y TH FIYF LG + L+FK
Sbjct: 61 GASFGCYFTHSKGSFIYFKLGALRFLVFK 89
>01_05_0324 - 20946774-20946935,20947301-20947780
Length = 213
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Frame = +2
Query: 104 ADMSEEMQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 250
ADMS MQ A CA ++ L+KF+ + +A +KKEFDK Y PTWHCIVG
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVG 175
Score = 34.3 bits (75), Expect = 0.055
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +1
Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKS 336
G+ +GS+VTH F+YF + ++ ++LFK+
Sbjct: 175 GTSYGSFVTHARGCFLYFSMDKIIVMLFKT 204
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 47.2 bits (107), Expect = 7e-06
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +2
Query: 50 KQKQTQDKMCDRKAVIK--NADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDK 217
K+K+ + +RK ++ ADM MQ+ AV A A+ K +A +KKEFD
Sbjct: 91 KEKEMEKGKEERKVSVRVRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDA 150
Query: 218 KYNPTWHCIVG 250
Y P WHCIVG
Sbjct: 151 TYGPAWHCIVG 161
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKS 336
G+ FGSYVTH F+YF + +V +LLF++
Sbjct: 161 GTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 31.9 bits (69), Expect = 0.29
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 32 EFVHLSKQKQTQDKMCDRKA-VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKE 208
EF L +++ + CD + +N + EE Q +DC + E+F+ E+D IK
Sbjct: 567 EFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTH 624
Query: 209 FDKKYN 226
+KK N
Sbjct: 625 EEKKAN 630
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 53 QKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEK 166
Q + ++K C KA + + S + +QD +D Q EK
Sbjct: 259 QHRKRNKFCGHKAAVDRLNESGKNEQDRIDDVVQMYEK 296
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 413 ILMRGSGCGTFP*VASSQSVAGGGKASA 496
IL GSG G P A++ AGGG A+A
Sbjct: 59 ILSVGSGGGAAPVAAAAAPAAGGGAAAA 86
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/97 (21%), Positives = 40/97 (41%)
Frame = -2
Query: 444 NVPQPEPRMRIXKGYPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHI 265
++P P P+ + YP + S+ EV + T + +Q+ D + +I
Sbjct: 88 DIPPPRPKRKPNSPYPRKSCLSSETSTREVQNDKATISNMTNNSTAQMAGDAALEKLTYI 147
Query: 264 RAKIRPTMQCQVGLYFLSNSFLMNAAMSFSMLNFSSA 154
+ R + + + N F + SFS +N SS+
Sbjct: 148 QKLQRKEISEKGSCSEVLNLFREVPSASFSSVNKSSS 184
>03_06_0490 +
34289904-34289967,34291912-34292237,34292401-34292536,
34292651-34292793,34292880-34293003,34293562-34293963,
34294121-34294176
Length = 416
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 339 TALKEQYSHLSQVEVDEVASLVCHIRAKIRPTMQCQV 229
T L+ QYSH+ V +A AK+RP+M+ V
Sbjct: 321 TRLEGQYSHVGAQTVATLALECLSYEAKMRPSMEAVV 357
>02_01_0791 - 5930553-5930802,5931042-5932351
Length = 519
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 315 HLSQVEVDEVASLVCHIRAKIRPTMQCQVGLYFLSNSFLMNAAMSFSMLNFS 160
HLS + +VA L H+R + + C L FLS + +++F+
Sbjct: 58 HLSTLTAGDVAGLWSHLRFNLVSVVACTTLLVFLSTVRFLTRPRPVYLVDFA 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,221,345
Number of Sequences: 37544
Number of extensions: 253899
Number of successful extensions: 656
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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