Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0052
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0496 + 3939731-3939758,3940459-3942773                           26   7.2  
01_06_0355 + 28657833-28660665,28660762-28661126                       26   7.2  
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799...    26   9.6  

>12_01_0496 + 3939731-3939758,3940459-3942773
          Length = 780

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 1   ISFIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRLIYFM 162
           + F  R  +   Y    IF N+YW   +  S T +R S+N S    L +L  FM
Sbjct: 167 LRFDDRYVLSLAYDGPDIF-NLYWPNPDQSSWTNYRISYNRSRSGVLDKLGKFM 219


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 250 TNNLFSLNLPSSIE*YQNLPPAEHSYN 330
           ++N FS NLP+S+E +  L   + SYN
Sbjct: 613 SSNRFSGNLPASLELFSTLTYLDLSYN 639


>04_04_1020 +
           30179214-30179285,30179597-30179671,30179839-30179947,
           30180425-30180642,30180729-30181309,30181387-30182185
          Length = 617

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 132 YRRGIPAKPKKCCGKNVIFTPINIV 58
           Y R +    ++C G+ V FTP+ ++
Sbjct: 447 YNRAVMPAARRCLGRAVAFTPLQLM 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,716,432
Number of Sequences: 37544
Number of extensions: 94780
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)