Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0047
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0645 + 4820461-4820736,4821034-4821086,4821670-4821876,482...    38   0.006
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908...    30   1.5  
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006...    29   3.4  

>02_01_0645 +
           4820461-4820736,4821034-4821086,4821670-4821876,
           4821975-4822055,4822137-4822302
          Length = 260

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTY-IELLAA*NVLSVIQS 513
           E  +R  Q+    KP KK+ L + DK +  K  NE  E+ + T+ +  +   NV+ ++ +
Sbjct: 117 ERRRRWAQRRTSSKPDKKEPLEVEDKDIKQKAENEEDEESEETHTMPGMLPTNVIEMLAA 176

Query: 514 RKEEISGSD 540
           R+++   SD
Sbjct: 177 REKQTFSSD 185


>01_07_0008 +
           40389744-40389896,40389967-40390048,40390693-40390808,
           40391107-40391195,40391859-40391904,40392248-40392716,
           40392825-40392952,40393182-40393253,40393512-40393885,
           40394005-40394545,40394653-40394952,40395167-40395268
          Length = 823

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 334 LENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQS 513
           LE     +Q+  R   K+K+ L I  K ++   A  R  Q+ N Y ELL +  +L  +  
Sbjct: 659 LEKAALSIQKNFRCWKKRKEFLKIR-KNVIKIQARVRAHQQHNKYKELLRSVGILEKVML 717

Query: 514 R 516
           R
Sbjct: 718 R 718


>08_02_0052 +
           11699468-11699700,11699799-11699916,11699991-11700659,
           11700741-11700842,11700921-11701181,11701838-11702009,
           11702128-11702528,11703171-11703587
          Length = 790

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 313 DSENYEGLENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKN 462
           + +   GL   + R+    R KP++ QLL++  K  LN+        ++N
Sbjct: 40  NQDKRNGLSQGENRMDTCTRKKPRRYQLLTMQQKETLNRAFQSCPNPDRN 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,975
Number of Sequences: 37544
Number of extensions: 288506
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)