Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0040
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    35   0.042
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    32   0.22 
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091...    31   0.51 
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    30   1.2  
09_06_0294 + 22089915-22091333                                         29   2.1  
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096...    28   3.6  
03_05_0290 - 22791338-22791925,22792012-22793196,22793835-227939...    27   6.3  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = -2

Query: 485 EGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTXKGDKGSXXTVEVGHEIGALA 306
           +GFAK F++ SD+  +    L+K+   RGG++   S  T   +       E G  + A+ 
Sbjct: 124 KGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTE---FDHPEKGDALYAME 180

Query: 305 KALDTQKQLAERIFFIH 255
            AL  +K + E++  +H
Sbjct: 181 LALALEKLVNEKLHNLH 197


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 485 EGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 369
           +GFAK F++ SD+  +    LIK+   RGG++   S  T
Sbjct: 156 KGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVT 194


>06_03_1127 -
           27807784-27807963,27808362-27808460,27809076-27809165,
           27809272-27809404,27809539-27809624,27810028-27810099,
           27810329-27810415,27810485-27810616,27810718-27810789,
           27810957-27811037,27811871-27811963,27812298-27812465
          Length = 430

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 210 TQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNGKDLSLAVYLFDEYL 64
           T Y     +S     +  LAGHT+D      E  G++L LA  L D+ L
Sbjct: 272 TYYKTASLISNSCKAVAILAGHTADVSMLAYE-YGRNLGLAFQLIDDVL 319


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 246 TKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENN 109
           T N DL H A+I  YI  E    +   ++   GHTSD + F  E +
Sbjct: 269 TGNRDLYH-AQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKS 313


>09_06_0294 + 22089915-22091333
          Length = 472

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 310 WPKPWTRRSSLPRGFSSSTGSH 245
           WP PW   S+   G+ ++TG H
Sbjct: 192 WPAPWIELSTTGLGYDTATGEH 213


>02_05_0418 +
           28807763-28807777,28809216-28809242,28809588-28809621,
           28809909-28810154,28810518-28810948,28812759-28813418
          Length = 470

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 313 PWPKPWTRRSSLPRGFSSSTGSH*KQRPPPR 221
           P+PKP  RR   PRG +  + +   + PPP+
Sbjct: 353 PFPKPVPRRGGAPRGKAWESFAAAGKEPPPK 383


>03_05_0290 -
           22791338-22791925,22792012-22793196,22793835-22793904,
           22795918-22795979
          Length = 634

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 288 EAACREDFLHPREVTKNSDLLHDAEITQYIEEEFVSQQADT 166
           + A   D L P   ++N+  L++  +   I EEFVS+Q+DT
Sbjct: 324 DGASVSDLLIPANTSENT--LYNVNLIIAIVEEFVSRQSDT 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,934,587
Number of Sequences: 37544
Number of extensions: 215994
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)