Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0068.Seq
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1020 - 33561454-33561568,33561839-33562070,33563286-335633...    33   0.39 
05_03_0258 - 11153709-11156090                                         30   2.1  
11_07_0015 + 27418462-27418917                                         29   4.8  
09_02_0266 - 6455957-6456412                                           29   4.8  
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186...    29   6.4  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   8.4  

>02_05_1020 -
           33561454-33561568,33561839-33562070,33563286-33563374,
           33563856-33563944
          Length = 174

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 632 LGSRCRKALNRNPKGSPRFRA*PGKSRRTWRXKGREEXRXGPGPXALGNFXRSP 793
           LGS  R++ +R+   SP++R  P   RR++  + R   R    P    ++ RSP
Sbjct: 110 LGSGKRRSRSRSRSRSPQYRKSPTYGRRSYSPRDRSPRRRSVSPVRGRSYSRSP 163


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 400 NINAYNLPFAIQVRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 266
           N+N YNL F +  +   + R      +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>11_07_0015 + 27418462-27418917
          Length = 151

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 701 GKSRRTWRXKGREEXRXGPG 760
           G++R  WR  GREE R G G
Sbjct: 30  GRAREEWRGDGREEWRSGEG 49


>09_02_0266 - 6455957-6456412
          Length = 151

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 701 GKSRRTWRXKGREEXRXGPG 760
           G++R  WR  GREE R G G
Sbjct: 30  GRAREEWRGDGREEWRSGEG 49


>06_03_0927 + 26015956-26018230,26018323-26018471,26018550-26018618,
            26018701-26018853,26018927-26019090,26019207-26019354,
            26020348-26020470,26020560-26020647,26020781-26020950
          Length = 1112

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 253  WKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAPEWR 375
            W+ L      A  H  +   G+++    P A+P+SC PEWR
Sbjct: 1038 WELLTGEEPYADLHYGVIIGGIVSNTLRP-AVPDSCDPEWR 1077


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 545 RTWTPTSKGEKPSIQGDGPLREPSP*SSFLGSRCRKALNRNPKGSP 682
           +T TP  +   P+     P R PSP S  + +    ALNR    SP
Sbjct: 197 KTLTPPRRSPSPASTLTPPRRSPSPASRRMSTGSTPALNRTRGPSP 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,352,915
Number of Sequences: 37544
Number of extensions: 467210
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)