Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0032.Seq
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352...    28   8.1  

>01_06_1448 -
           37434159-37434242,37434875-37434968,37435077-37435250,
           37435536-37435627,37435947-37436056,37437274-37437349,
           37437445-37437537,37437617-37437817
          Length = 307

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
 Frame = -2

Query: 512 LRDMLQKIGFEKRRTVR*SGLWERPTSSSREIQVDDHCETTSIDXTTILSVSCNRGCIAR 333
           + D L+  G   +  VR S +W RP ++   + V+ +   + +        S +   I  
Sbjct: 1   MADRLELQGRHGKSRVRVSRVWRRPAAAGGHVIVEWNVAVSVVSDCLPSYTSDDNSAIVA 60

Query: 332 SVSLGNPVLVYDRRTQQSLSLLPGTTHLSQ-CVFLFPQALD*TLLSAAR 189
           + S+ N V V  +   + +S+      L +    L+PQ  + T+  A R
Sbjct: 61  TDSIKNTVYVKAKECTEIVSMEEFAVILGRHFTSLYPQVSEATVTIAER 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,532,624
Number of Sequences: 37544
Number of extensions: 402222
Number of successful extensions: 947
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)