Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0032
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    29   4.7  
09_02_0167 + 5221910-5222516,5222826-5224642                           29   4.7  

>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 291 LVLSQNTLTRQYLFIMYHMRQRPLSVKSTRKVVL*VKNIDTYVH 422
           L++S     +  L +  +M +  LS++ +RK+++   ++D+YVH
Sbjct: 587 LIISGRDAQQNELIVKRYMSKGDLSLRFSRKLLVYFASLDSYVH 630


>09_02_0167 + 5221910-5222516,5222826-5224642
          Length = 807

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 81  DNLTDCLTQDGYKQTLSFLKIIGLYNL 161
           +NLT    +DG  Q+L+F+ +IGL NL
Sbjct: 735 ENLTWIEMEDGTMQSLNFIALIGLRNL 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,159
Number of Sequences: 37544
Number of extensions: 257822
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)