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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0028
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0544 - 18655186-18655567,18656835-18657151                       81   8e-16
03_02_0826 + 11569961-11570301,11572220-11572454                       81   8e-16
02_05_0089 - 25715637-25716333,25716481-25717238                       80   1e-15
10_08_0543 - 18649894-18650233,18651446-18651981                       78   6e-15
02_05_1047 + 33745656-33745964                                         75   4e-14
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548...    38   0.010
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    34   0.12 
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    33   0.21 
03_05_0260 + 22468243-22468292,22469125-22469125,22469130-224692...    31   1.1  
11_02_0038 - 7631462-7634428,7635975-7636250                           29   4.5  
04_01_0050 - 536390-537231,538108-538375                               29   4.5  
03_05_0031 + 20040889-20041592,20041932-20041977                       29   4.5  
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463...    29   4.5  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    29   4.5  

>10_08_0544 - 18655186-18655567,18656835-18657151
          Length = 232

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 39/82 (47%), Positives = 55/82 (67%)
 Frame = +1

Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
           L+A+ G I+DVT+ + FYGPGGPY+ FAGKDA+R LA  +++    D   D+S LG  E+
Sbjct: 92  LMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA--KMSFEPQDLTGDISGLGPFEL 149

Query: 436 ASAIEWEEQFRGKYGIVGRLLK 501
            +  +WE +F GKY  VG + K
Sbjct: 150 DALQDWEYKFMGKYVKVGTVKK 171


>03_02_0826 + 11569961-11570301,11572220-11572454
          Length = 191

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 38/80 (47%), Positives = 53/80 (66%)
 Frame = +1

Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
           L+A+ G ++DVTRG+ FYGP GPYS FAG+DATR LA   ++    D   D+  LG DE+
Sbjct: 100 LIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRALAL--MSFDPIDLTGDLDGLGPDEL 157

Query: 436 ASAIEWEEQFRGKYGIVGRL 495
               +WE++F+ +Y  VG L
Sbjct: 158 EVLQDWEDKFKERYPTVGHL 177


>02_05_0089 - 25715637-25716333,25716481-25717238
          Length = 484

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 39/83 (46%), Positives = 56/83 (67%)
 Frame = +1

Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
           L+A+ G I+DVT+ + FYGPGGPY+ FAG+DA+R LA  +++   +D   DVS LG  E+
Sbjct: 239 LMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALA--KMSFELDDLTGDVSGLGPIEL 296

Query: 436 ASAIEWEEQFRGKYGIVGRLLKL 504
            +  EWE +F  KY  VG + K+
Sbjct: 297 EALHEWEGKFMSKYVKVGTIKKI 319


>10_08_0543 - 18649894-18650233,18651446-18651981
          Length = 291

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 37/83 (44%), Positives = 56/83 (67%)
 Frame = +1

Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
           L+A+ G I+DV++ + FYGPGGPY+ FAGKDA+R LA  +++    D  DD+S L   E+
Sbjct: 165 LMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALA--KMSFEPQDLTDDISGLSLLEL 222

Query: 436 ASAIEWEEQFRGKYGIVGRLLKL 504
           ++  +WE +F  KY  VG + K+
Sbjct: 223 SALQDWEYKFSSKYVKVGTIKKV 245


>02_05_1047 + 33745656-33745964
          Length = 102

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 33/79 (41%), Positives = 52/79 (65%)
 Frame = +1

Query: 259 LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIA 438
           ++V G ++DVT G+ FYGPGG Y+ FAG++A+R L  G+++  + D   D+S L   E+ 
Sbjct: 24  VSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRAL--GKMSKDDADVSGDLSGLSDKELG 81

Query: 439 SAIEWEEQFRGKYGIVGRL 495
              +WE +F+ KY +V RL
Sbjct: 82  VLADWETKFQAKYPVVARL 100


>03_02_0079 +
           5485090-5485238,5486066-5486137,5486764-5486840,
           5486946-5486989,5487583-5487639,5487640-5487686,
           5488010-5488184,5489501-5489662,5489845-5489883
          Length = 273

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 277 IFDVTRGKRFYGPGGPYSAFAG 342
           +FDVT+GK  YGPGG Y  FAG
Sbjct: 52  VFDVTKGKSNYGPGGGYHHFAG 73


>02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,
            3238937-3239151,3239569-3240031,3240562-3240715,
            3241724-3241833,3242540-3242797,3242843-3242854,
            3243492-3243545,3244202-3244312,3244390-3244545,
            3244798-3245201,3245405-3245501,3246041-3246050,
            3246097-3246164,3246652-3246762,3246874-3247074,
            3247384-3247485,3247980-3248087,3248209-3248411,
            3248563-3248680,3248774-3248854,3248958-3249500,
            3249602-3249730
          Length = 1428

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 319  GPYSAFAGKDATRGLAT-GQVAASENDEYDDVSDLGSDEIASAIEWEEQFRGKYGIVGRL 495
            G Y   AG+   RGL   G V     DE  + SDL +  +      E QFR  Y ++  L
Sbjct: 856  GEYIQMAGRAGRRGLDNIGTVIVMCRDEIPEESDLKNLIVGKPTRLESQFRLTYTMILHL 915

Query: 496  LKLGERQKITVMMR 537
            L++ E  K+  M++
Sbjct: 916  LRV-EELKVEDMLK 928


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 566 IGLL-RFLVFALIITVIFWRSPNLRRRPTMPYFPLNCSSHSMAEAISSEPRSLTSSYSSF 390
           IGLL  FLV  LI TVI ++  NLR   + P FP   S+     A +  P SL   +   
Sbjct: 14  IGLLFAFLVAKLISTVIAFKEDNLRITRSTPTFP---SAADTPAAPAPPPASLDGGHGDT 70

Query: 389 SDAA 378
           SD +
Sbjct: 71  SDGS 74


>03_05_0260 +
           22468243-22468292,22469125-22469125,22469130-22469285,
           22469416-22469919
          Length = 236

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -1

Query: 503 NLRRRPTMPYFPLNCSSHSMAEAISSEPRSLTSSYSSFSDAATCPVA 363
           N +RR + P F  NCS  S+  A S+   S T S  S      CP A
Sbjct: 161 NNKRRESSP-FTSNCSGGSLTTATSTSTSSSTDSDGSLRQPPPCPRA 206


>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 5   TRRTQHVYKMADETNSLTVWDELTSPLNL 91
           T  T+  Y M D TN   V+DEL  P NL
Sbjct: 803 TTHTKESYTMEDITNIENVFDELKPPCNL 831


>04_01_0050 - 536390-537231,538108-538375
          Length = 369

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 403 DDVSDLGSDEIASAIEWEEQ 462
           DDV   GSD  AS  EWEE+
Sbjct: 333 DDVDSSGSDVYASLCEWEEE 352


>03_05_0031 + 20040889-20041592,20041932-20041977
          Length = 249

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -1

Query: 566 IGLLRFLVFALIITVIFWRSPNLRRRPTMPYFPLNCSSHSMAEAISSEPRSLTSSYSSFS 387
           I L+R L   L++ +  W +       + P  P+ CSS S      +   +++S+Y  F 
Sbjct: 3   ITLVRLLPLVLVVALA-WPAAEAPAAASPPPDPVQCSSGS-----GTADCTVSSAYGVFP 56

Query: 386 DAATCPVAKPLVAS 345
           D +TC  A  +  S
Sbjct: 57  DRSTCRAAAAVYPS 70


>02_01_0618 -
           4629776-4630037,4630188-4630330,4631200-4631254,
           4631539-4631603,4631714-4631857,4632141-4632194,
           4632363-4632410,4632466-4632541,4632624-4632722,
           4633000-4633097,4633615-4633719,4633816-4633924,
           4634137-4634252,4634332-4634496
          Length = 512

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 8   RRTQHVYKMADETNSLTVWDELTSPLNLVLIGVIVYLIYK-IIKSNFESEAN 160
           + TQH Y +  ET  + +W    S +++V+I +++   Y  ++ S  E + N
Sbjct: 242 KETQHCYSLELETQKMGIW---LSTISMVIIQLMIVEEYNDLVTSQLEKQRN 290


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 348 VFTSKRRVWASRSIKSLASSNIKYNSI 268
           +F S RR W S+++ +LAS    Y+S+
Sbjct: 218 LFLSSRRAWISQALTTLASDLTSYSSV 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,199,895
Number of Sequences: 37544
Number of extensions: 302922
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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