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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0027
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435...    81   8e-16
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    37   0.013
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149...    37   0.017
08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-38...    32   0.49 
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    29   2.6  
03_03_0278 - 16126803-16129049                                         29   3.5  
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694...    29   3.5  
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001...    29   3.5  
03_02_0036 + 5182345-5183511                                           29   4.6  
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133...    28   6.1  
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310...    28   8.0  
07_01_0084 + 657846-658538,660652-661920                               28   8.0  

>10_08_0985 -
           22042801-22042963,22043019-22043138,22043261-22043562,
           22044055-22044351,22044448-22044556,22044826-22045358,
           22045446-22045644,22045741-22045865,22045937-22046020,
           22046093-22046221,22046337-22046465,22046593-22046739,
           22047106-22047346,22047859-22047980
          Length = 899

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 37/81 (45%), Positives = 50/81 (61%)
 Frame = +2

Query: 8   KPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 187
           K  N LFWSP G+FIV A L    G LEF + ++   M   +H+  + I WDPTGRY+ +
Sbjct: 515 KQANALFWSPGGRFIVFAGLKGFNGQLEFYNVDELETMATGEHFMATDIMWDPTGRYLAS 574

Query: 188 GVSSXKCKMDCGYYIWSFQGK 250
            V+S   +M+ G+ IWSF GK
Sbjct: 575 AVTSVH-EMENGFQIWSFSGK 594



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 33/124 (26%), Positives = 58/124 (46%)
 Frame = +1

Query: 145 VWDRMGSNRTLCSDWCVFXQM*NGLRLLHLVIPGQDTRRVMKEGFAQFHWRPRPPTLLSX 324
           +WD  G  R L S      +M NG ++      G+   +V K+ F QF WRPRPP+LL+ 
Sbjct: 564 MWDPTG--RYLASAVTSVHEMENGFQIWSF--SGKQLYKVSKDHFFQFLWRPRPPSLLTP 619

Query: 325 XXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPR 504
                       Y  ++E +D+   ++ S++   +R +  +++  +     Q   E++P 
Sbjct: 620 EKEDEIAKNLRKYSKKYEQEDQDAFNQLSEQERKRRKQLQEEWEGWVAKWKQLHEEERPY 679

Query: 505 RPNL 516
           R  L
Sbjct: 680 RMEL 683


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 17  NHLFWSPSGQFIVLANLGLTGGALEF-LDTNDFTIMNVADHYQ-MSGIEWDPTGRYVVT 187
           N L WSP GQF  LA  GL    + +  DT +       +H Q +  + W P GRY+VT
Sbjct: 210 NALCWSPDGQF--LAVPGLRNNVVMYDRDTGEEVFTLKGEHEQPVCSLCWSPNGRYLVT 266


>11_01_0189 -
           1493618-1493637,1493728-1493795,1494070-1494207,
           1494647-1494698,1494803-1494902,1495606-1495681,
           1495757-1495844,1496248-1496342,1496506-1496605,
           1496765-1496879,1497077-1497241,1497362-1497547
          Length = 400

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 29  WSPSGQFIVLANLGLTGGALEFLDTNDFTIMN-VADHYQMSGIEWDPTGRYVVTGVSS 199
           WSPSG +++ A L    G     +TN +T     + +  +SG  WDP GR V+   S+
Sbjct: 238 WSPSGDYLLTAKLD---GTFHLWETNTWTSEPWSSSNGYVSGANWDPEGRIVLLSFSN 292


>08_01_0058 +
           388989-389102,389226-389337,389457-389483,389787-389859,
           389958-390061,390144-390358,390429-390528,390739-390805,
           391628-391716,391810-391948,392057-392157,392921-393088,
           393302-393510
          Length = 505

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +2

Query: 23  LFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSX 202
           L WS  G F+V A++  +    + +  +    +    HY + G+ WDP G+Y+ +  S  
Sbjct: 118 LQWSQDGAFLVSASVDNSCIVWDAIKGSVQQKLEGHLHY-VQGVAWDPLGQYIASLSSDR 176

Query: 203 KCKM 214
            C++
Sbjct: 177 TCRI 180


>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 367 SQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQ 495
           SQ    +     ++S   ++K  E   KF E +E K+QEW  Q
Sbjct: 255 SQLLDNNTATMKESSSTDISKSVENYNKFKEEQELKLQEWLRQ 297


>03_03_0278 - 16126803-16129049
          Length = 748

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 286 FHWRPRPPTLLSXXXXXXXXXXXXXYYSQFES--KDRMRSSKASKELVAKRTEQMKKFTE 459
           F W+PRPPT +S                + +S  KD+++  +  +  VA   ++ KK   
Sbjct: 401 FSWKPRPPTRISLVKTFTQFDVRGILMEKAKSDLKDKLKEMQTKRSQVAANGKKNKK-NM 459

Query: 460 YRES 471
           ++ES
Sbjct: 460 FKES 463


>02_04_0544 -
           23768808-23768910,23769005-23769030,23769379-23769497,
           23769542-23769668,23769842-23769905,23769981-23770095,
           23770867-23771101,23771196-23771382,23771948-23772305,
           23772432-23772465
          Length = 455

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 155 EWDPTGRYVVTGVSSXKCKMDCGYYIWSFQGKI 253
           EW P GR+ +T  ++ + ++D G  I+   G +
Sbjct: 288 EWSPDGRHFMTATTAPRLQIDNGIKIFDHNGSL 320


>01_05_0147 +
           18597194-18597643,18598347-18598681,18600073-18600147,
           18600325-18600427,18601554-18601642,18602953-18603064,
           18604093-18604146,18604271-18604319,18606236-18606347,
           18606389-18606436,18607000-18607327
          Length = 584

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 385 DRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRP 510
           D   SSK S  LV K  E  K+  + ++   +EW    P +P
Sbjct: 504 DTYNSSKRSVSLVQKHRESKKEKKKQKQRDKEEWEGNHPWKP 545


>03_02_0036 + 5182345-5183511
          Length = 388

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 120 IMVKSFVSKNSNAPPVSPRLARTMNCPDGDQKRWLNGFL 4
           +++ S V+    APPV+  LA   + P G   +W++  L
Sbjct: 243 VLICSVVAAAIAAPPVAAALAAAASIPVGSMGKWIDSLL 281


>10_06_0085 +
           10511258-10512327,10512978-10513058,10513318-10513396,
           10514160-10514201
          Length = 423

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 120 IMVKSFVSKNSNAPPVSPRLARTMNCPDGDQKRWLNGFL 4
           ++V S V+    APPV+  LA   + P G   +W++  L
Sbjct: 233 LLVCSVVAAAIAAPPVAAALAAAASMPVGSAGKWMDSLL 271


>08_01_0353 -
           3107628-3107774,3108177-3108213,3108248-3109164,
           3109210-3110952
          Length = 947

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +1

Query: 385 DRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQK 498
           D   S +  ++++ +  +++ +  E R  +++EW EQK
Sbjct: 11  DEEESERRRQKMIEEEKKRLDEEMELRRRRVKEWQEQK 48


>07_01_0084 + 657846-658538,660652-661920
          Length = 653

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 55  PGQPWTDWWCIGVLG 99
           P QPW  WW  G+ G
Sbjct: 344 PLQPWKPWWATGIYG 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,602,069
Number of Sequences: 37544
Number of extensions: 333274
Number of successful extensions: 1014
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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