Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0026
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058     29   3.5  
02_04_0596 + 24195863-24196179,24196257-24196359                       29   4.6  

>02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058
          Length = 365

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 358 GGRGSTQGSAAMGPRVHAEVPATRDAARGHFRDTP 254
           G  GS+  SAA   R +  VP  + AARG    TP
Sbjct: 192 GAVGSSSSSAAAAARANTVVPVPQRAARGATAPTP 226


>02_04_0596 + 24195863-24196179,24196257-24196359
          Length = 139

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 323 HSRRPLGTPPASIQSK*KRHVVINSLCKSTH 415
           HS+RP   P A I++   RHV  N++C+ T+
Sbjct: 25  HSQRP---PTAFIEAALARHVAFNAMCRRTN 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,163,747
Number of Sequences: 37544
Number of extensions: 340220
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)