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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0015
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      103   5e-23
08_02_1181 - 24985963-24986242,24987109-24987197                      102   1e-22
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     87   6e-18
01_06_0193 - 27359575-27361962                                         27   4.9  
01_03_0147 - 13125065-13126679,13126802-13127664                       27   4.9  
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272...    27   6.5  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   6.5  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  103 bits (248), Expect = 5e-23
 Identities = 44/62 (70%), Positives = 53/62 (85%)
 Frame = +3

Query: 75  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 254
           +VTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+R+
Sbjct: 16  VVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRS 75

Query: 255 FP 260
            P
Sbjct: 76  VP 77



 Score = 30.3 bits (65), Expect = 0.70
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +2

Query: 293 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 385
           ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 89  NDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  102 bits (245), Expect = 1e-22
 Identities = 43/64 (67%), Positives = 53/64 (82%)
 Frame = +3

Query: 69  KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 248
           + +VTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+
Sbjct: 12  EEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGI 71

Query: 249 RNFP 260
           R+ P
Sbjct: 72  RSVP 75



 Score = 31.9 bits (69), Expect = 0.23
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +2

Query: 293 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 385
           ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 87  NDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 87.0 bits (206), Expect = 6e-18
 Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 18/89 (20%)
 Frame = +3

Query: 48  KKRQISHKR--IVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKF 173
           KKR    ++  +VTREYT+NLHKRLHG                  FKK+AP AIKEIRKF
Sbjct: 4   KKRGAGTRKDEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKF 63

Query: 174 AEKQMGTPDIRVDTRLNKFLWSKGVRNFP 260
           A+K MGT DIR+D +LNK +W+ G+R+ P
Sbjct: 64  AQKAMGTTDIRIDVKLNKAIWTNGIRSVP 92



 Score = 30.7 bits (66), Expect = 0.53
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +2

Query: 293 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 385
           ND+ED+  +L++LVT   +P   +KGL T+ V+
Sbjct: 104 NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136


>01_06_0193 - 27359575-27361962
          Length = 795

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 234 WSKGVRNFPSVSV*GFHEDVMMMKIPHISY 323
           WS+G R   SVS     ED   +KIPH  Y
Sbjct: 316 WSRGCRPTFSVSCGQQREDFTFVKIPHGDY 345


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 268 DTEGKFLTPLDQRNLFKRVSTRMSGVPICFS 176
           +T   +LT L  RNL + +  R +G P C++
Sbjct: 477 ETARSYLTDLISRNLIQALHLRHNGTPSCYT 507


>05_07_0331 -
           29324967-29326256,29326919-29327020,29327226-29327278,
           29327628-29327674,29327762-29327841,29327933-29328016,
           29328383-29328433,29328925-29329050,29329231-29329347,
           29329710-29329851,29329986-29330053,29330509-29330608,
           29330713-29330840,29330929-29330997,29331083-29331205
          Length = 859

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +3

Query: 114 LHGVGFKKRAPRAIKEIRKFAEKQMG--TPD-IRVDTRLNKFLWSKGVRNFPSVS 269
           + GV  K R  R I+E+ +    + G  T D + VDT L +F+W +G   +P++S
Sbjct: 69  IEGVSHKIR--RQIEELERAGGVESGALTVDGVPVDTYLTRFVWDEG--KYPTMS 119


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 96  VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 200
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,442
Number of Sequences: 37544
Number of extensions: 179383
Number of successful extensions: 382
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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