Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0013
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...   101   3e-22
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...   101   3e-22
03_02_0050 + 5272471-5274861                                           29   1.6  
04_04_1687 - 35365766-35366356,35367137-35368135                       29   2.7  
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    27   6.3  
01_06_0641 - 30782235-30782423,30782498-30782605,30782848-307829...    27   8.4  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =  101 bits (242), Expect = 3e-22
 Identities = 44/84 (52%), Positives = 56/84 (66%)
 Frame = +3

Query: 3   VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182
           +IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K LW              
Sbjct: 50  IIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKY 109

Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254
             AKKID+H+YH +YMK KGN+FK
Sbjct: 110 REAKKIDKHMYHDMYMKVKGNMFK 133



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +2

Query: 236 EG*CVQDKRVLMEYIHRKKAEKARTKMLSDQ 328
           +G   ++KRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =  101 bits (242), Expect = 3e-22
 Identities = 44/84 (52%), Positives = 56/84 (66%)
 Frame = +3

Query: 3   VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182
           +IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K LW              
Sbjct: 50  IIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKY 109

Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254
             AKKID+H+YH +YMK KGN+FK
Sbjct: 110 REAKKIDKHMYHDMYMKVKGNMFK 133



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +2

Query: 236 EG*CVQDKRVLMEYIHRKKAEKARTKMLSDQ 328
           +G   ++KRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 400 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLNTLP 239
           LLL     L+  +CL   +     L  +HL P LLS +P+D L H H  +L  LP
Sbjct: 79  LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHLP 133


>04_04_1687 - 35365766-35366356,35367137-35368135
          Length = 529

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 5   HQETCSSPLPRPCPQKHR 58
           H E C +PLP P P  HR
Sbjct: 53  HAEQCPAPLPDPLPSAHR 70


>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 374 RGACVPPLLYCGGP 333
           +GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165


>01_06_0641 -
           30782235-30782423,30782498-30782605,30782848-30782959,
           30783429-30783526,30784249-30784336,30784780-30784875,
           30785101-30785171,30786003-30786075,30787023-30787324,
           30787418-30787503,30788024-30788084,30789386-30789688
          Length = 528

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 168 IFLEPFVFVPIVPSVAYAHWQYLFSXQSHS 79
           IF +P++ +PI      A WQ+L +  S++
Sbjct: 380 IFRQPYIILPIHGDFLIAEWQHLQNDSSYT 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,959
Number of Sequences: 37544
Number of extensions: 251281
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)