Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0012
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1246 - 35703119-35703811,35704033-35704074,35704355-357045...    31   1.1  
12_02_0010 - 12275652-12276221,12276804-12276935                       27   9.9  
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    27   9.9  
01_01_0242 + 1997427-1997429,1997893-1998580,2000199-2000234,200...    27   9.9  

>01_06_1246 -
           35703119-35703811,35704033-35704074,35704355-35704576,
           35705077-35705466,35705560-35705637
          Length = 474

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 632 SWVVKWVTRAPWTSTRKSAHPL*DYKNSKNLGIVTTAAPPFEPKRVTASR 483
           SW+ +W+T  PW S   S     D+ ++KN    T+A+  + P+ ++  R
Sbjct: 267 SWMERWMTSRPWESRVISDKDPKDHYSTKNPS--TSASRTYVPRAISIQR 314


>12_02_0010 - 12275652-12276221,12276804-12276935
          Length = 233

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 653 WTELHIPSWVVKWVTRAPW 597
           W  +H+P W+ +WV    W
Sbjct: 211 WIRIHVPGWMRRWVKPNWW 229


>03_01_0307 +
           2414709-2414762,2415769-2415841,2416090-2416154,
           2416288-2416365,2416880-2416999,2418021-2418091,
           2418808-2418900,2419242-2419311,2420236-2420436,
           2421345-2421557,2422354-2422440,2422441-2422652,
           2422901-2423042,2423424-2423592,2424050-2424126,
           2424393-2424563,2425095-2425171,2425299-2425401,
           2426066-2426185,2426301-2426444,2426826-2426975,
           2427398-2427541,2427816-2427903,2428672-2428799,
           2429329-2429533,2429843-2430015,2430174-2430392,
           2430490-2430684
          Length = 1213

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 558 IISKWVGAFTCRCPWGSSNPLNNPAGD 638
           ++S+W G    +C W  S P   P  D
Sbjct: 307 LLSRWTGRIWEQCAWKFSRPCKEPPSD 333


>01_01_0242 +
           1997427-1997429,1997893-1998580,2000199-2000234,
           2000786-2001114,2001178-2001855
          Length = 577

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 582 FTCRCPWGSSNPLNNPAGD 638
           F+C+CP G  NP +  AGD
Sbjct: 213 FSCKCPSGVHNPTSCVAGD 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,395,443
Number of Sequences: 37544
Number of extensions: 278424
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)