Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0060.Seq
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420     29   5.6  
09_02_0366 + 7941550-7942161,7942230-7942775                           28   9.7  

>04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420
          Length = 186

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 251 IHSKTYLTQKLPGNETSIICEIHLKFIFL 165
           +H KT+L +  PG E S  C ++L+F  L
Sbjct: 1   MHLKTHLIRSNPGWEDSTYCHVYLEFSVL 29


>09_02_0366 + 7941550-7942161,7942230-7942775
          Length = 385

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 80  TKYAFYVCNKTFNLLSRIQLYVY 12
           T+++  VCNKTFN  + +Q++++
Sbjct: 186 TQFSCAVCNKTFNRFNNMQMHMW 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,545,062
Number of Sequences: 37544
Number of extensions: 283045
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)