Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0053.Seq
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0275 - 11379934-11380031,11381619-11381946                       29   4.3  
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366...    28   5.6  
02_04_0376 - 22474473-22476947                                         28   5.6  
02_05_1127 + 34292894-34293284,34293948-34295443                       28   7.5  
12_02_1125 - 26327433-26328239                                         27   9.9  
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356...    27   9.9  

>05_03_0275 - 11379934-11380031,11381619-11381946
          Length = 141

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 640 GTTTPL-ISAVKQ*CVLGLKGDPAVVTIRETLQLISQGGWRHSRCDVYELR*PRCN 476
           G   PL I   ++ C +  +GD   V  ++  +L +   WRH R +V +   P+C+
Sbjct: 6   GARVPLDIGGERRNCAMAGEGDDVTVKGKQIARLTNALVWRHGRLEVVQW--PQCH 59


>10_08_0485 +
           18235597-18236256,18236353-18236400,18236522-18236644,
           18237062-18237211,18237702-18237873,18237965-18238025,
           18238129-18238237
          Length = 440

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -1

Query: 406 LRAGQLLGQVLARSRGRQSPSGVAARVAVDIYNI 305
           L AG LL    A +RGR+ PSG AA VAV  + +
Sbjct: 181 LPAGALL-VAFAAARGRRQPSGWAAWVAVAAFGL 213


>02_04_0376 - 22474473-22476947
          Length = 824

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = -3

Query: 473 RFVIRPLVTRV*VHSDAHVGSQPTRGSAARPSTSPVEGTSVSQRCRRTSRCRYLQYLVL 297
           RF + PL  R+  H   H    PT         +P     +   CRR    R L+YL L
Sbjct: 108 RFALAPLALRLFAHMHRHAPPAPT---------APTYNAVIRSLCRRADLARALRYLSL 157


>02_05_1127 + 34292894-34293284,34293948-34295443
          Length = 628

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 372 PGRGDVSLPAVSPHESL 322
           PGRGDV L  V PH+ L
Sbjct: 173 PGRGDVPLAGVRPHDPL 189


>12_02_1125 - 26327433-26328239
          Length = 268

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 416 GSQPTRGSAARPSTSPVEGTSVSQ 345
           G   +RGSA RP+ SP  G++VS+
Sbjct: 98  GCPGSRGSAVRPNGSPWRGSAVSR 121


>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
            3560853-3561491,3562154-3562450,3562553-3563407,
            3564363-3564545,3565041-3565118,3565762-3565974,
            3566075-3566238,3566357-3566445,3566761-3566891,
            3566980-3567148,3567255-3567327,3567525-3567606,
            3567677-3567808,3568743-3568818,3568965-3569065,
            3569446-3569636,3569738-3569912,3570604-3570854,
            3571327-3571603,3572184-3572267,3572496-3573206
          Length = 1867

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 564  LYVRPYNSYLKVGGGIHVVTSMSSGNPDATKIC 466
            +Y  PY   + +GG +  V +  +G  D T IC
Sbjct: 1301 IYTHPYPPLVHLGGMLGTVNAFGAGAGDLTGIC 1333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,274,912
Number of Sequences: 37544
Number of extensions: 319174
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)