Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0035.Seq
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    29   3.8  
07_03_1101 + 23967298-23967366,23968918-23969021,23969616-239697...    29   5.0  

>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -2

Query: 530  PTRPAVNG*SRYQIRILNFFAIAIDKYISY*VNICHRRLESTIIKAGNVTFGQLLVNQKN 351
            PT+   NG S   I +  FFA   D Y +Y   +    L++ +   GN+   +LL+   N
Sbjct: 806  PTQFQENGPSYENIGLF-FFARDTDSYENYYSKLVENMLKNDLALRGNIETAELLIFPSN 864

Query: 350  ELLTLYSMTKLF 315
             L   +    +F
Sbjct: 865  ILSKNFQRWNMF 876


>07_03_1101 +
           23967298-23967366,23968918-23969021,23969616-23969716,
           23969792-23969858,23969910-23970045,23970470-23970583,
           23970649-23970786,23970865-23970949,23971029-23971075,
           23971216-23971351,23971396-23971436
          Length = 345

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 725 DLHAKATEYLVAATKDES 672
           D H+KAT YLV A  DES
Sbjct: 31  DFHSKATNYLVTACDDES 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,305,945
Number of Sequences: 37544
Number of extensions: 314427
Number of successful extensions: 583
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)