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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0025.Seq
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1013 - 7931756-7935109                                           31   1.0  
06_01_0350 + 2534422-2535615                                           31   1.4  
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    30   1.8  
12_02_0407 - 18654134-18654172,18654913-18655803                       30   2.4  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   3.2  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   5.5  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    29   5.5  
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378...    28   7.3  
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705     28   7.3  
08_02_1491 + 27500532-27500972                                         28   9.6  

>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 295 GYEPARHLHVHPSPNFQCPQRVSGHR 218
           G+EP R + +HP+P  + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 165 PWNSNAQAEKKTLPGPLGGVFRP 97
           PW S+A+ E+K LP PL  +F P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = -1

Query: 470 TNIDQTRH--RL----HPLPVQTRHAPVLRANP 390
           T IDQ  H  R+    H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>12_02_0407 - 18654134-18654172,18654913-18655803
          Length = 309

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 22  EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 186
           E G+G ++++ PS+ +T      P+ P     R     + CLS    ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 440 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 351
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 434 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 321
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = -1

Query: 230 IRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGT 51
           I+  P M  S   +  +   GFHG   L+   KL PDL +    HF      LVF   G 
Sbjct: 188 IKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGA 244

Query: 50  I 48
           I
Sbjct: 245 I 245


>12_02_0969 -
           24936399-24936699,24936779-24936949,24937032-24937852,
           24937946-24938407,24938486-24938890
          Length = 719

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 268 VHPSPNFQCPQRVSGHRRKCGALRVP 191
           VHP+P  Q     S HR  C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273


>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
          Length = 1172

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 286 PARHLHVHPSPNFQCPQRVSGHRRKCGALRVPNHISLL*DSMELER 149
           P+ H  +H S     P+R    RR+CGAL +    +   D + + R
Sbjct: 18  PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63


>08_02_1491 + 27500532-27500972
          Length = 146

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 617 RKVVSVSFRARSARXCTTAVQRSAQNWHGQR 709
           R VV+V+  AR A   T A   +A  W+G+R
Sbjct: 105 RDVVAVASMARGAHHRTMAAPAAAPRWYGRR 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,702,268
Number of Sequences: 37544
Number of extensions: 545775
Number of successful extensions: 1761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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